Wall clock time and date at job start Mon Mar 30 2020 01:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47135 * 300.00228 * 3 2 1 6 6 H 1.48498 * 109.47191 * 60.00145 * 3 2 1 7 7 C 1.37874 * 120.00580 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00784 * 185.12935 * 7 2 1 9 9 C 1.50708 * 119.99629 * 5.12340 * 7 2 1 10 10 H 1.09001 * 109.67693 * 335.06499 * 9 7 2 11 11 C 1.53397 * 109.70864 * 95.60052 * 9 7 2 12 12 C 1.53134 * 109.44321 * 169.39182 * 11 9 7 13 13 C 1.53356 * 109.52478 * 289.99274 * 12 11 9 14 14 C 1.50855 * 108.41513 * 49.99454 * 13 12 11 15 15 N 1.33577 * 128.03936 * 163.24429 * 14 13 12 16 16 C 1.30750 * 109.15392 * 180.08293 * 15 14 13 17 17 N 1.35312 * 108.76439 * 359.97438 * 16 15 14 18 18 H 0.96998 * 126.49821 * 179.97438 * 17 16 15 19 19 C 1.35035 * 123.98906 * 343.28855 * 14 13 12 20 20 H 0.96997 * 119.99709 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47525 * 289.37338 * 11 9 7 22 22 H 1.08998 * 109.47852 * 49.39781 * 11 9 7 23 23 H 1.09001 * 109.46097 * 169.97754 * 12 11 9 24 24 H 1.08996 * 109.45663 * 50.00333 * 12 11 9 25 25 H 1.08997 * 109.67449 * 290.25891 * 13 12 11 26 26 H 1.09006 * 109.70171 * 169.74171 * 13 12 11 27 27 H 1.07997 * 125.61574 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0813 -1.1959 0.0831 9 6 1.2556 -2.4965 -0.1177 10 1 0.2354 -2.3670 0.2434 11 6 1.2315 -2.9494 -1.5831 12 6 0.7089 -4.3865 -1.6639 13 6 1.7516 -5.3449 -1.0757 14 6 2.1735 -4.8199 0.2742 15 7 2.8104 -5.4739 1.2493 16 6 2.9912 -4.6656 2.2610 17 7 2.4668 -3.4572 1.9517 18 1 2.4595 -2.6695 2.5177 19 6 1.9511 -3.5566 0.6960 20 1 -0.4849 0.8400 0.0004 21 1 0.5772 -2.2921 -2.1558 22 1 2.2403 -2.9059 -1.9936 23 1 0.5229 -4.6472 -2.7058 24 1 -0.2191 -4.4677 -1.0980 25 1 2.6169 -5.3962 -1.7364 26 1 1.3161 -6.3379 -0.9635 27 1 3.4788 -4.9205 3.1903 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259803213.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:54 Heat of formation + Delta-G solvation = 14.175917 kcal Electronic energy + Delta-G solvation = -11914.858865 eV Core-core repulsion = 9864.632707 eV Total energy + Delta-G solvation = -2050.226157 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.89482 -37.53380 -35.03044 -33.40859 -30.71729 -29.54252 -26.90677 -23.67254 -22.79737 -22.01944 -19.55403 -18.72950 -18.24516 -16.48708 -16.03723 -15.38486 -15.03005 -14.51138 -14.43711 -14.16339 -13.32763 -13.00972 -12.84414 -12.74904 -12.22034 -11.99452 -11.57613 -11.53999 -11.18210 -10.69336 -10.52474 -10.44450 -8.84799 -8.17663 -6.31592 1.37015 1.39237 1.45884 1.52084 2.30959 2.40028 2.59139 3.09484 3.77211 4.22110 4.33133 4.37702 4.68960 4.79072 4.84676 4.96681 5.03228 5.19813 5.27603 5.34358 5.52007 5.58257 5.79189 5.86868 6.05446 6.28226 6.79908 6.84378 7.31864 7.38308 8.87906 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043674 B = 0.013363 C = 0.011122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.961226 B = 2094.840133 C = 2516.987135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.022 3.978 3 Si 0.955 3.045 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.046 0.954 9 C 0.098 3.902 10 H 0.037 0.963 11 C -0.093 4.093 12 C -0.111 4.111 13 C -0.020 4.020 14 C -0.057 4.057 15 N -0.522 5.522 16 C 0.157 3.843 17 N -0.552 5.552 18 H 0.426 0.574 19 C 0.008 3.992 20 H 0.265 0.735 21 H 0.043 0.957 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -4.876 1.405 5.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.178 4.178 3 Si 0.780 3.220 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.064 0.936 9 C 0.078 3.922 10 H 0.055 0.945 11 C -0.132 4.132 12 C -0.149 4.149 13 C -0.058 4.058 14 C -0.185 4.185 15 N -0.243 5.243 16 C -0.126 4.126 17 N -0.154 5.154 18 H 0.264 0.736 19 C -0.111 4.111 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.226 -5.621 1.360 6.623 hybrid contribution 0.051 2.296 0.472 2.344 sum 3.277 -3.326 1.833 5.016 Atomic orbital electron populations 1.70027 1.07277 1.27690 1.50853 1.25703 0.95548 1.02364 0.94157 0.85563 0.78895 0.79681 0.77842 1.19482 1.20513 1.20357 1.21213 0.92782 0.91220 1.51160 0.93613 1.17521 0.94806 0.89186 0.90687 0.94459 1.21543 0.99376 0.95067 0.97211 1.21610 0.97653 0.94435 1.01157 1.19841 0.98306 0.98304 0.89391 1.20860 1.07290 0.91664 0.98651 1.69815 1.19251 1.33621 1.01577 1.25655 1.04150 0.81148 1.01603 1.42942 1.44217 1.13878 1.14319 0.73562 1.21928 1.03417 0.98218 0.87540 0.92567 0.93835 0.93706 0.89614 0.93107 0.91053 0.90368 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.53 12.77 21.45 0.27 -51.26 15 2 C 0.02 1.17 5.45 84.65 0.46 1.63 15 3 Si 0.95 41.91 29.54 68.60 2.03 43.94 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 7 C -0.53 -27.76 8.25 25.60 0.21 -27.55 15 8 H 0.05 2.45 7.82 -2.91 -0.02 2.43 15 9 C 0.10 4.84 2.63 -12.17 -0.03 4.81 15 10 H 0.04 2.09 7.25 -2.39 -0.02 2.07 15 11 C -0.09 -4.12 5.22 30.77 0.16 -3.96 15 12 C -0.11 -3.99 5.90 30.76 0.18 -3.81 15 13 C -0.02 -0.72 6.30 30.02 0.19 -0.54 15 14 C -0.06 -2.40 6.98 41.60 0.29 -2.11 15 15 N -0.52 -20.97 11.25 -187.90 -2.11 -23.08 15 16 C 0.16 5.28 13.05 180.10 2.35 7.63 15 17 N -0.55 -21.00 6.08 -186.45 -1.13 -22.14 15 18 H 0.43 14.63 8.96 -92.71 -0.83 13.80 15 19 C 0.01 0.35 6.37 41.14 0.26 0.61 15 20 H 0.27 14.05 8.31 -92.71 -0.77 13.28 15 21 H 0.04 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.04 1.97 8.08 -2.39 -0.02 1.95 15 23 H 0.09 2.54 8.14 -2.39 -0.02 2.52 15 24 H 0.05 1.89 8.11 -2.39 -0.02 1.87 15 25 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.08 2.53 8.14 -2.38 -0.02 2.51 15 27 H 0.24 5.36 8.06 -2.91 -0.02 5.34 15 Total: -1.00 -62.67 230.27 3.47 -59.20 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.34 Total: 16.62 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 4.07 Total: -23.28 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.97 Total: -96.47 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -62.67 3.47 -59.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803213.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.374 kcal (2) G-P(sol) polarization free energy of solvation -62.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds