Wall clock time and date at job start Mon Mar 30 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48501 * 109.46930 * 264.83162 * 3 2 1 5 5 H 1.48506 * 109.47463 * 24.83064 * 3 2 1 6 6 H 1.48500 * 109.47152 * 144.83280 * 3 2 1 7 7 C 1.37882 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99613 * 4.91198 * 7 2 1 9 9 C 1.50696 * 119.99867 * 184.91157 * 7 2 1 10 10 H 1.08998 * 109.70995 * 335.02704 * 9 7 2 11 11 C 1.53303 * 109.71077 * 214.57137 * 9 7 2 12 12 C 1.53132 * 109.52720 * 190.80247 * 11 9 7 13 13 C 1.53348 * 109.52863 * 69.92904 * 12 11 9 14 14 C 1.50866 * 108.41517 * 310.03406 * 13 12 11 15 15 N 1.33574 * 128.02960 * 196.70789 * 14 13 12 16 16 C 1.30757 * 109.14653 * 179.84607 * 15 14 13 17 17 N 1.35314 * 108.76714 * 0.02562 * 16 15 14 18 18 H 0.96991 * 126.50032 * 180.02562 * 17 16 15 19 19 C 1.35031 * 123.98763 * 16.59454 * 14 13 12 20 20 H 0.97003 * 120.00343 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.51157 * 70.73549 * 11 9 7 22 22 H 1.09000 * 109.35049 * 310.76572 * 11 9 7 23 23 H 1.08997 * 109.45794 * 309.90959 * 12 11 9 24 24 H 1.09000 * 109.45768 * 189.94686 * 12 11 9 25 25 H 1.08995 * 109.67519 * 190.30130 * 13 12 11 26 26 H 1.09009 * 109.70658 * 69.78241 * 13 12 11 27 27 H 1.07997 * 125.62224 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6058 1.9833 -1.3944 5 1 1.3962 2.6818 0.5880 6 1 3.4878 1.4741 0.8064 7 6 2.0046 -1.1941 0.0005 8 1 1.4675 -2.1276 -0.0791 9 6 3.5074 -1.1964 0.1123 10 1 3.9046 -0.2492 -0.2527 11 6 4.0857 -2.3498 -0.7157 12 6 5.5726 -2.5178 -0.3907 13 6 5.7274 -3.0681 1.0323 14 6 4.8897 -2.2262 1.9625 15 7 4.9619 -2.1512 3.2942 16 6 4.0643 -1.3037 3.7253 17 7 3.3864 -0.8098 2.6635 18 1 2.6650 -0.1620 2.6901 19 6 3.9089 -1.3944 1.5507 20 1 -0.4851 0.8400 -0.0004 21 1 3.9680 -2.1308 -1.7769 22 1 3.5544 -3.2702 -0.4732 23 1 6.0715 -1.5514 -0.4627 24 1 6.0230 -3.2125 -1.0997 25 1 6.7737 -3.0176 1.3335 26 1 5.3855 -4.1027 1.0655 27 1 3.8916 -1.0417 4.7587 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259803215.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:57 Heat of formation + Delta-G solvation = 15.827667 kcal Electronic energy + Delta-G solvation = -12058.925286 eV Core-core repulsion = 10008.770754 eV Total energy + Delta-G solvation = -2050.154532 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.95319 -37.61881 -35.12305 -33.54524 -31.12769 -29.61182 -26.94854 -23.49480 -22.88970 -21.91970 -19.73483 -19.09970 -18.38551 -16.45588 -16.05821 -15.42798 -15.08550 -14.92133 -14.42609 -14.28458 -13.46735 -13.18845 -13.01566 -12.89316 -12.08196 -11.79823 -11.62790 -11.53654 -11.41173 -10.82242 -10.60781 -10.54172 -8.83645 -8.37107 -6.42724 1.24050 1.30718 1.37264 1.42824 2.23230 2.29114 2.53007 2.98238 3.74226 4.16095 4.23376 4.30377 4.62253 4.64714 4.77294 4.80451 4.92839 5.10638 5.15745 5.27408 5.40032 5.55967 5.62190 5.74601 6.03603 6.25590 6.62600 6.74577 7.21582 7.29369 8.79374 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.038255 B = 0.016661 C = 0.013776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.753119 B = 1680.175704 C = 2032.019560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.252 1.252 7 C -0.512 4.512 8 H 0.031 0.969 9 C 0.074 3.926 10 H 0.044 0.956 11 C -0.098 4.098 12 C -0.110 4.110 13 C -0.024 4.024 14 C -0.053 4.053 15 N -0.518 5.518 16 C 0.154 3.846 17 N -0.556 5.556 18 H 0.418 0.582 19 C 0.003 3.997 20 H 0.269 0.731 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.633 0.173 2.238 9.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.175 4.175 3 Si 0.754 3.246 4 H -0.188 1.188 5 H -0.208 1.208 6 H -0.176 1.176 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.054 3.946 10 H 0.062 0.938 11 C -0.136 4.136 12 C -0.148 4.148 13 C -0.062 4.062 14 C -0.181 4.181 15 N -0.238 5.238 16 C -0.128 4.128 17 N -0.157 5.157 18 H 0.256 0.744 19 C -0.116 4.116 20 H 0.078 0.922 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.080 0.920 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 10.050 -0.187 2.745 10.420 hybrid contribution -1.432 1.523 -0.300 2.112 sum 8.618 1.336 2.445 9.057 Atomic orbital electron populations 1.70041 1.08073 1.28248 1.51533 1.25844 0.95285 1.02259 0.94157 0.85999 0.79097 0.79327 0.80181 1.18820 1.20827 1.17593 1.21110 0.90691 0.93122 1.50075 0.95029 1.17885 0.94170 0.96749 0.85756 0.93783 1.21508 0.95407 0.97416 0.99281 1.21631 0.95701 1.01757 0.95729 1.19902 0.97823 0.96704 0.91745 1.20946 1.01727 1.04306 0.91122 1.69834 1.23176 1.19772 1.11040 1.25631 0.94041 0.97997 0.95167 1.43028 1.30074 1.35328 1.07223 0.74383 1.22056 0.97494 0.99995 0.92085 0.92218 0.91224 0.93642 0.91962 0.88714 0.90070 0.91220 0.74266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.34 13.96 21.45 0.30 -55.04 15 2 C 0.02 1.24 5.47 84.66 0.46 1.71 15 3 Si 0.93 40.92 26.77 68.60 1.84 42.76 15 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 15 5 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 6 H -0.25 -10.47 6.82 99.48 0.68 -9.79 15 7 C -0.51 -27.74 8.80 25.60 0.23 -27.52 15 8 H 0.03 1.95 8.06 -2.91 -0.02 1.93 15 9 C 0.07 3.36 2.12 -12.20 -0.03 3.33 15 10 H 0.04 1.97 5.31 -2.39 -0.01 1.96 15 11 C -0.10 -3.74 5.21 30.74 0.16 -3.58 15 12 C -0.11 -3.35 5.90 30.76 0.18 -3.17 15 13 C -0.02 -0.77 6.30 30.02 0.19 -0.59 15 14 C -0.05 -2.15 6.98 41.61 0.29 -1.86 15 15 N -0.52 -20.72 11.25 -187.89 -2.11 -22.83 15 16 C 0.15 5.40 13.05 180.10 2.35 7.75 15 17 N -0.56 -22.22 6.08 -186.44 -1.13 -23.35 15 18 H 0.42 16.16 8.73 -92.71 -0.81 15.35 15 19 C 0.00 0.12 6.37 41.14 0.26 0.38 15 20 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 15 22 H 0.04 1.84 8.08 -2.39 -0.02 1.82 15 23 H 0.06 1.85 8.12 -2.39 -0.02 1.83 15 24 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.08 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.07 2.21 8.14 -2.38 -0.02 2.19 15 27 H 0.24 5.77 8.06 -2.91 -0.02 5.75 15 Total: -1.00 -65.33 226.51 3.32 -62.01 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.34 Total: 20.01 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.10 Total: -23.56 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -2.95 Total: -101.22 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.84 Total: 42.76 kcal Total: -65.33 3.32 -62.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803215.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.839 kcal (2) G-P(sol) polarization free energy of solvation -65.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds