Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38614 * 120.80019 * 2 1 4 4 N 1.32324 * 119.10398 * 179.72168 * 3 2 1 5 5 C 1.31806 * 120.81494 * 0.56015 * 4 3 2 6 6 C 1.50701 * 119.12545 * 179.68422 * 5 4 3 7 7 N 1.31787 * 121.75471 * 359.71322 * 5 4 3 8 8 C 1.32349 * 120.81891 * 359.97438 * 7 5 4 9 9 C 1.50693 * 120.44491 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.47073 * 269.97518 * 9 8 7 11 11 H 1.08000 * 119.99358 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99895 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46762 * 89.99969 * 14 12 10 16 16 H 1.48494 * 109.47161 * 209.99945 * 14 12 10 17 17 H 1.48499 * 109.47047 * 330.00456 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.72233 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.72334 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.72315 * 1 2 3 21 21 H 1.08004 * 120.44886 * 359.97256 * 3 2 1 22 22 H 1.09001 * 109.47344 * 270.02665 * 6 5 4 23 23 H 1.09001 * 109.46457 * 30.02376 * 6 5 4 24 24 H 1.08995 * 109.47252 * 150.01986 * 6 5 4 25 25 H 1.08994 * 109.47521 * 29.97520 * 9 8 7 26 26 H 1.08997 * 109.47143 * 149.97740 * 9 8 7 27 27 H 0.97003 * 119.99559 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1906 0.0000 4 7 3.5394 1.1515 0.0056 5 6 4.1809 0.0000 0.0001 6 6 5.6879 -0.0001 -0.0004 7 7 3.5395 -1.1512 -0.0055 8 6 2.2165 -1.1903 -0.0053 9 6 1.4917 -2.5115 -0.0112 10 6 1.2491 -2.9450 -1.4341 11 1 1.5858 -2.3255 -2.2521 12 6 0.5965 -4.1319 -1.6914 13 7 0.1861 -4.8861 -0.6951 14 14 0.2952 -4.6689 -3.4550 15 1 1.4427 -5.4851 -3.9267 16 1 -0.9480 -5.4783 -3.5204 17 1 0.1517 -3.4703 -4.3197 18 1 -0.3633 -0.0050 1.0277 19 1 -0.3633 -0.8875 -0.5181 20 1 -0.3633 0.8925 -0.5095 21 1 1.6973 2.1375 -0.0004 22 1 6.0509 0.0051 -1.0282 23 1 6.0514 0.8873 0.5177 24 1 6.0513 -0.8926 0.5088 25 1 2.0975 -3.2606 0.4985 26 1 0.5370 -2.4044 0.5037 27 1 -0.2734 -5.7209 -0.8762 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = 24.816416 kcal Electronic energy + Delta-G solvation = -11500.509787 eV Core-core repulsion = 9450.745036 eV Total energy + Delta-G solvation = -2049.764751 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.42841 -34.65442 -33.37218 -32.46130 -29.67082 -28.51816 -25.28081 -24.20378 -22.07057 -20.53533 -17.14289 -16.47728 -15.46081 -14.63375 -14.44510 -13.73083 -13.01411 -12.96559 -12.50849 -12.26840 -12.00441 -11.86400 -11.75463 -11.23342 -10.87567 -10.71304 -10.20890 -10.12139 -9.91205 -9.31149 -8.51117 -8.39170 -8.31014 -6.13418 -4.17154 1.55974 1.84176 3.27033 3.33230 3.36823 4.30152 4.46645 4.53372 4.79483 5.21991 5.28771 5.49212 5.61317 5.79381 5.84761 5.92341 6.13334 6.15420 6.35411 6.61876 6.77286 7.16220 7.31144 7.44951 7.81104 7.83005 8.16107 8.84847 8.85125 9.46229 10.97136 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043313 B = 0.010763 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.295066 B = 2600.974036 C = 2871.987754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.200 4.200 3 C 0.132 3.868 4 N -0.543 5.543 5 C 0.294 3.706 6 C -0.077 4.077 7 N -0.516 5.516 8 C 0.218 3.782 9 C 0.058 3.942 10 C -0.509 4.509 11 H 0.055 0.945 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 H 0.065 0.935 19 H 0.093 0.907 20 H 0.058 0.942 21 H 0.156 0.844 22 H 0.078 0.922 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.043 0.957 26 H 0.045 0.955 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 8.614 1.287 9.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.204 4.204 3 C -0.032 4.032 4 N -0.259 5.259 5 C 0.026 3.974 6 C -0.136 4.136 7 N -0.231 5.231 8 C 0.073 3.927 9 C 0.021 3.979 10 C -0.548 4.548 11 H 0.073 0.927 12 C -0.140 4.140 13 N -0.529 5.529 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 H 0.083 0.917 19 H 0.111 0.889 20 H 0.077 0.923 21 H 0.173 0.827 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.573 8.453 1.340 9.274 hybrid contribution -1.116 -0.288 -0.984 1.516 sum 2.457 8.165 0.355 8.534 Atomic orbital electron populations 1.20660 0.89629 1.03787 1.02033 1.21551 0.99179 0.94841 1.04839 1.22913 0.89674 0.97731 0.92909 1.68094 1.09964 1.30718 1.17075 1.23134 0.97820 0.84069 0.92346 1.20431 0.86730 1.03259 1.03173 1.68234 1.10490 1.29446 1.14914 1.22653 0.88524 0.97510 0.84020 1.18403 0.94635 0.86123 0.98743 1.20804 1.37681 1.05731 0.90564 0.92719 1.24950 0.95368 0.96151 0.97502 1.69948 1.38910 1.13193 1.30847 0.86480 0.77772 0.78740 0.84402 1.20452 1.20999 1.19834 0.91676 0.88873 0.92293 0.82678 0.90360 0.90484 0.90069 0.93921 0.93720 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.29 36.01 0.33 -1.40 15 2 C -0.20 -3.92 5.91 -104.36 -0.62 -4.53 15 3 C 0.13 2.34 11.01 -17.20 -0.19 2.15 15 4 N -0.54 -10.30 10.34 -10.72 -0.11 -10.41 15 5 C 0.29 5.77 7.64 -157.19 -1.20 4.57 15 6 C -0.08 -1.14 10.32 36.01 0.37 -0.77 15 7 N -0.52 -11.72 10.27 -6.99 -0.07 -11.79 15 8 C 0.22 5.03 6.01 -82.25 -0.49 4.54 15 9 C 0.06 1.50 4.64 -29.03 -0.13 1.37 15 10 C -0.51 -14.10 8.78 -34.44 -0.30 -14.41 15 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 15 12 C 0.06 1.73 5.46 -17.82 -0.10 1.64 15 13 N -0.89 -25.64 13.29 55.43 0.74 -24.91 15 14 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 18 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 19 H 0.09 1.81 6.56 -51.93 -0.34 1.47 15 20 H 0.06 0.81 8.10 -51.93 -0.42 0.39 15 21 H 0.16 2.12 8.06 -52.48 -0.42 1.70 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.04 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.04 1.14 6.82 -51.93 -0.35 0.79 15 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 240.12 15.07 3.62 3.62 Total: -1.00 -30.54 240.12 -6.37 -36.91 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -3.19 Total: -2.83 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.33 Total: -6.85 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.55 Total: -47.11 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -30.54 -6.37 -36.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.731 kcal (2) G-P(sol) polarization free energy of solvation -30.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds