Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38614 * 120.80019 * 2 1 4 4 N 1.32324 * 119.10398 * 179.72168 * 3 2 1 5 5 C 1.31806 * 120.81494 * 0.56015 * 4 3 2 6 6 C 1.50701 * 119.12545 * 179.68422 * 5 4 3 7 7 N 1.31787 * 121.75471 * 359.71322 * 5 4 3 8 8 C 1.32349 * 120.81891 * 359.97438 * 7 5 4 9 9 C 1.50693 * 120.44491 * 180.02562 * 8 7 5 10 10 C 1.50707 * 109.47073 * 269.97518 * 9 8 7 11 11 H 1.08000 * 119.99358 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99895 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00034 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46762 * 89.99969 * 14 12 10 16 16 H 1.48494 * 109.47161 * 209.99945 * 14 12 10 17 17 H 1.48499 * 109.47047 * 330.00456 * 14 12 10 18 18 H 1.09002 * 109.47152 * 269.72233 * 1 2 3 19 19 H 1.09001 * 109.46980 * 149.72334 * 1 2 3 20 20 H 1.09004 * 109.47113 * 29.72315 * 1 2 3 21 21 H 1.08004 * 120.44886 * 359.97256 * 3 2 1 22 22 H 1.09001 * 109.47344 * 270.02665 * 6 5 4 23 23 H 1.09001 * 109.46457 * 30.02376 * 6 5 4 24 24 H 1.08995 * 109.47252 * 150.01986 * 6 5 4 25 25 H 1.08994 * 109.47521 * 29.97520 * 9 8 7 26 26 H 1.08997 * 109.47143 * 149.97740 * 9 8 7 27 27 H 0.97003 * 119.99559 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1906 0.0000 4 7 3.5394 1.1515 0.0056 5 6 4.1809 0.0000 0.0001 6 6 5.6879 -0.0001 -0.0004 7 7 3.5395 -1.1512 -0.0055 8 6 2.2165 -1.1903 -0.0053 9 6 1.4917 -2.5115 -0.0112 10 6 1.2491 -2.9450 -1.4341 11 1 1.5858 -2.3255 -2.2521 12 6 0.5965 -4.1319 -1.6914 13 7 0.1861 -4.8861 -0.6951 14 14 0.2952 -4.6689 -3.4550 15 1 1.4427 -5.4851 -3.9267 16 1 -0.9480 -5.4783 -3.5204 17 1 0.1517 -3.4703 -4.3197 18 1 -0.3633 -0.0050 1.0277 19 1 -0.3633 -0.8875 -0.5181 20 1 -0.3633 0.8925 -0.5095 21 1 1.6973 2.1375 -0.0004 22 1 6.0509 0.0051 -1.0282 23 1 6.0514 0.8873 0.5177 24 1 6.0513 -0.8926 0.5088 25 1 2.0975 -3.2606 0.4985 26 1 0.5370 -2.4044 0.5037 27 1 -0.2734 -5.7209 -0.8762 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259804489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = 5.431117 kcal Electronic energy + Delta-G solvation = -11501.350396 eV Core-core repulsion = 9450.745036 eV Total energy + Delta-G solvation = -2050.605360 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96404 -36.38017 -34.91785 -34.39161 -30.97135 -30.46903 -26.68364 -26.09377 -23.72103 -22.15323 -18.69486 -18.61193 -17.09737 -16.30804 -16.12092 -15.20795 -14.54372 -14.45215 -14.19512 -13.94952 -13.56144 -13.19755 -13.09647 -12.92587 -12.73295 -12.56641 -12.03665 -11.90954 -11.65302 -11.17718 -10.64583 -9.98908 -9.83827 -8.26273 -6.38329 0.06065 0.26105 1.38941 1.40210 1.51083 2.36773 2.87493 3.05847 3.18848 3.32098 3.80247 4.07764 4.13551 4.46430 4.66622 4.72972 4.85654 4.87836 5.03951 5.08756 5.22617 5.35422 5.41336 5.65138 5.69702 6.05635 6.23130 6.69063 7.28250 7.30757 8.84736 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043313 B = 0.010763 C = 0.009747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.295066 B = 2600.974036 C = 2871.987754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.205 4.205 3 C 0.145 3.855 4 N -0.542 5.542 5 C 0.282 3.718 6 C -0.074 4.074 7 N -0.550 5.550 8 C 0.183 3.817 9 C 0.071 3.929 10 C -0.524 4.524 11 H 0.045 0.955 12 C 0.014 3.986 13 N -0.923 5.923 14 Si 0.966 3.034 15 H -0.276 1.276 16 H -0.273 1.273 17 H -0.267 1.267 18 H 0.081 0.919 19 H 0.059 0.941 20 H 0.096 0.904 21 H 0.205 0.795 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.083 0.917 25 H 0.005 0.995 26 H 0.037 0.963 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.649 10.456 0.448 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.209 4.209 3 C -0.021 4.021 4 N -0.257 5.257 5 C 0.015 3.985 6 C -0.133 4.133 7 N -0.266 5.266 8 C 0.039 3.961 9 C 0.033 3.967 10 C -0.562 4.562 11 H 0.063 0.937 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.790 3.210 15 H -0.201 1.201 16 H -0.198 1.198 17 H -0.191 1.191 18 H 0.100 0.900 19 H 0.078 0.922 20 H 0.114 0.886 21 H 0.222 0.778 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.102 0.898 25 H 0.023 0.977 26 H 0.055 0.945 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.568 10.293 0.505 10.906 hybrid contribution -1.077 -0.791 -0.672 1.495 sum 2.491 9.502 -0.167 9.825 Atomic orbital electron populations 1.20655 0.87822 1.03939 1.03120 1.21795 1.00546 0.94245 1.04357 1.23654 0.89319 0.98751 0.90332 1.68252 1.10623 1.30062 1.16727 1.23959 0.99737 0.83415 0.91427 1.20579 0.83634 1.04611 1.04439 1.68150 1.10676 1.31513 1.16254 1.22329 0.89299 0.97481 0.87001 1.18065 0.93941 0.87219 0.97443 1.20996 1.37884 1.06086 0.91246 0.93699 1.25804 0.94876 0.96034 1.01832 1.70052 1.39457 1.13653 1.33049 0.85439 0.77952 0.78469 0.79156 1.20149 1.19817 1.19094 0.90041 0.92194 0.88564 0.77830 0.88977 0.88041 0.89778 0.97701 0.94514 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.13 9.29 71.24 0.66 -2.46 15 2 C -0.21 -7.81 5.91 -19.69 -0.12 -7.93 15 3 C 0.14 4.67 11.01 84.71 0.93 5.60 15 4 N -0.54 -19.14 10.34 -187.83 -1.94 -21.08 15 5 C 0.28 10.72 7.64 138.75 1.06 11.78 15 6 C -0.07 -2.05 10.32 71.24 0.74 -1.32 15 7 N -0.55 -25.31 10.27 -176.03 -1.81 -27.11 15 8 C 0.18 8.61 6.01 42.56 0.26 8.87 15 9 C 0.07 3.83 4.64 29.10 0.13 3.96 15 10 C -0.52 -29.88 8.78 25.60 0.22 -29.66 15 11 H 0.04 2.58 7.74 -2.91 -0.02 2.56 15 12 C 0.01 0.78 5.46 84.65 0.46 1.24 15 13 N -0.92 -54.36 13.29 21.45 0.28 -54.07 15 14 Si 0.97 43.85 29.54 68.60 2.03 45.88 15 15 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 18 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 19 H 0.06 2.33 6.56 -2.39 -0.02 2.32 15 20 H 0.10 2.32 8.10 -2.38 -0.02 2.30 15 21 H 0.21 4.48 8.06 -2.91 -0.02 4.46 15 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 23 H 0.10 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.00 0.28 8.14 -2.39 -0.02 0.26 15 26 H 0.04 1.98 6.82 -2.39 -0.02 1.96 15 27 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 Total: -1.00 -67.23 240.12 4.07 -63.16 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: 1.16 Total: 3.14 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.35 Total: -9.91 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -3.46 Total: -102.27 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -67.23 4.07 -63.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.594 kcal (2) G-P(sol) polarization free energy of solvation -67.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds