Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34113 * 126.02519 * 2 1 4 4 C 1.30446 * 109.25222 * 180.08455 * 3 2 1 5 5 N 1.35334 * 108.72784 * 0.07278 * 4 3 2 6 6 C 1.34664 * 126.02318 * 180.02562 * 2 1 3 7 7 C 1.51246 * 143.09552 * 359.83566 * 6 2 1 8 8 C 1.54553 * 104.29829 * 196.53470 * 7 6 2 9 9 C 1.47069 * 142.22467 * 179.64906 * 5 4 3 10 10 H 1.09003 * 110.22129 * 282.02189 * 9 5 4 11 11 C 1.50697 * 110.24070 * 43.95308 * 9 5 4 12 12 H 1.07996 * 120.00593 * 116.20750 * 11 9 5 13 13 C 1.37882 * 119.99690 * 296.20674 * 11 9 5 14 14 N 1.31509 * 120.00296 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99758 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46786 * 60.00242 * 15 13 11 17 17 H 1.48494 * 109.47026 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47118 * 300.00139 * 15 13 11 19 19 H 1.09003 * 109.47354 * 269.97530 * 1 2 3 20 20 H 1.09000 * 109.47061 * 29.97449 * 1 2 3 21 21 H 1.08997 * 109.47498 * 149.97878 * 1 2 3 22 22 H 1.08001 * 125.63906 * 180.10773 * 4 3 2 23 23 H 1.08997 * 110.46814 * 77.83100 * 7 6 2 24 24 H 1.08995 * 110.57371 * 315.28899 * 7 6 2 25 25 H 1.09002 * 110.92216 * 92.85114 * 8 7 6 26 26 H 1.09005 * 110.91869 * 216.45284 * 8 7 6 27 27 H 0.97000 * 119.99995 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2958 1.0846 0.0000 4 6 3.5447 0.7082 -0.0018 5 7 3.5909 -0.6443 -0.0047 6 6 2.2990 -1.0891 -0.0005 7 6 2.2757 -2.6014 0.0014 8 6 3.7064 -3.0046 0.4248 9 6 4.5309 -1.7754 -0.0133 10 1 4.9286 -1.9271 -1.0168 11 6 5.6537 -1.5276 0.9607 12 1 5.7804 -2.1757 1.8152 13 6 6.5195 -0.4732 0.7609 14 7 6.3652 0.3164 -0.2793 15 14 7.9110 -0.1656 1.9687 16 1 8.7988 -1.3552 2.0144 17 1 8.6924 1.0193 1.5323 18 1 7.3476 0.0839 3.3198 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5141 22 1 4.4005 1.3670 -0.0006 23 1 2.0523 -2.9804 -0.9958 24 1 1.5464 -2.9723 0.7215 25 1 3.7668 -3.1494 1.5035 26 1 4.0312 -3.9001 -0.1050 27 1 6.9745 1.0579 -0.4201 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259808873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = 50.209545 kcal Electronic energy + Delta-G solvation = -11991.787446 eV Core-core repulsion = 9943.123824 eV Total energy + Delta-G solvation = -2048.663622 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.14249 -35.67992 -32.88968 -31.28023 -28.59775 -28.14653 -24.94769 -23.47300 -20.90147 -19.40111 -18.45430 -16.74745 -15.56385 -14.82739 -14.22938 -13.38927 -13.07335 -12.49853 -12.34638 -11.98005 -11.84579 -11.73947 -11.67766 -11.29922 -11.05198 -10.76101 -10.43636 -10.02409 -9.59937 -8.91432 -8.80602 -8.01776 -7.00228 -6.43291 -4.57650 3.13089 3.19888 3.21347 3.34757 4.12957 4.26320 4.37901 5.05867 5.33495 5.50659 5.72811 5.74849 5.94605 6.18420 6.28950 6.33911 6.44156 6.50247 6.56480 6.75332 7.03742 7.13182 7.51971 7.57507 7.93128 7.94565 8.49039 8.78801 9.14785 9.35867 10.62836 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050223 B = 0.013479 C = 0.011462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.383563 B = 2076.816062 C = 2442.275194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.016 4.016 3 N -0.531 5.531 4 C 0.234 3.766 5 N -0.419 5.419 6 C -0.081 4.081 7 C -0.045 4.045 8 C -0.123 4.123 9 C 0.247 3.753 10 H 0.056 0.944 11 C -0.532 4.532 12 H 0.070 0.930 13 C 0.071 3.929 14 N -0.877 5.877 15 Si 0.906 3.094 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.273 1.273 19 H 0.053 0.947 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.201 0.799 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -4.158 0.515 6.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.147 4.147 3 N -0.252 5.252 4 C -0.048 4.048 5 N -0.097 5.097 6 C -0.200 4.200 7 C -0.084 4.084 8 C -0.161 4.161 9 C 0.149 3.851 10 H 0.074 0.926 11 C -0.570 4.570 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.513 5.513 15 Si 0.733 3.267 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.198 1.198 19 H 0.072 0.928 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.218 0.782 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.315 -3.190 0.405 5.381 hybrid contribution 1.204 -0.452 0.563 1.404 sum -3.111 -3.642 0.968 4.887 Atomic orbital electron populations 1.19814 0.89476 1.01053 1.00686 1.19689 0.95146 0.87896 1.11920 1.70248 1.00905 1.29736 1.24281 1.24877 0.95082 0.82152 1.02714 1.47873 1.07552 1.06972 1.47335 1.22217 0.87901 0.95321 1.14582 1.20469 0.97880 0.89145 1.00895 1.22741 0.93487 0.98199 1.01696 1.19752 0.87051 0.79797 0.98468 0.92603 1.21296 1.10899 1.14325 1.10491 0.91146 1.25158 0.97654 0.95312 0.95396 1.69919 1.37566 1.16624 1.27176 0.86408 0.81191 0.78045 0.81090 1.19752 1.20769 1.19835 0.92837 0.92376 0.92627 0.78249 0.91330 0.91275 0.90957 0.90848 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.42 36.01 0.38 -0.53 15 2 C -0.02 -0.37 7.09 -82.86 -0.59 -0.96 15 3 N -0.53 -13.37 11.25 -10.82 -0.12 -13.49 15 4 C 0.23 6.08 11.87 -90.15 -1.07 5.01 15 5 N -0.42 -10.54 3.19 -106.77 -0.34 -10.88 15 6 C -0.08 -1.83 7.42 -81.45 -0.60 -2.43 15 7 C -0.05 -0.83 6.84 -26.80 -0.18 -1.01 15 8 C -0.12 -2.38 6.63 -25.20 -0.17 -2.55 15 9 C 0.25 5.98 3.30 -68.06 -0.22 5.76 15 10 H 0.06 1.44 8.14 -51.93 -0.42 1.02 15 11 C -0.53 -13.73 8.72 -34.44 -0.30 -14.03 15 12 H 0.07 1.77 7.60 -52.49 -0.40 1.37 15 13 C 0.07 1.82 5.26 -17.82 -0.09 1.73 15 14 N -0.88 -23.29 10.56 55.43 0.59 -22.70 15 15 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 15 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 15 19 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 21 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 22 H 0.20 5.26 6.40 -52.49 -0.34 4.92 15 23 H 0.07 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.07 1.40 7.77 -51.93 -0.40 0.99 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 230.48 15.07 3.47 3.47 Total: -1.00 -28.67 230.48 -7.51 -36.18 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -3.23 Total: 1.40 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.86 Total: -9.01 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.12 Total: -47.07 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.67 -7.51 -36.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.392 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds