Wall clock time and date at job start Mon Mar 30 2020 01:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34113 * 126.02519 * 2 1 4 4 C 1.30446 * 109.25222 * 180.08455 * 3 2 1 5 5 N 1.35334 * 108.72784 * 0.07278 * 4 3 2 6 6 C 1.34664 * 126.02318 * 180.02562 * 2 1 3 7 7 C 1.51246 * 143.09552 * 359.83566 * 6 2 1 8 8 C 1.54553 * 104.29829 * 196.53470 * 7 6 2 9 9 C 1.47069 * 142.22467 * 179.64906 * 5 4 3 10 10 H 1.09003 * 110.22129 * 282.02189 * 9 5 4 11 11 C 1.50697 * 110.24070 * 43.95308 * 9 5 4 12 12 H 1.07996 * 120.00593 * 116.20750 * 11 9 5 13 13 C 1.37882 * 119.99690 * 296.20674 * 11 9 5 14 14 N 1.31509 * 120.00296 * 0.02562 * 13 11 9 15 15 Si 1.86807 * 119.99758 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46786 * 60.00242 * 15 13 11 17 17 H 1.48494 * 109.47026 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47118 * 300.00139 * 15 13 11 19 19 H 1.09003 * 109.47354 * 269.97530 * 1 2 3 20 20 H 1.09000 * 109.47061 * 29.97449 * 1 2 3 21 21 H 1.08997 * 109.47498 * 149.97878 * 1 2 3 22 22 H 1.08001 * 125.63906 * 180.10773 * 4 3 2 23 23 H 1.08997 * 110.46814 * 77.83100 * 7 6 2 24 24 H 1.08995 * 110.57371 * 315.28899 * 7 6 2 25 25 H 1.09002 * 110.92216 * 92.85114 * 8 7 6 26 26 H 1.09005 * 110.91869 * 216.45284 * 8 7 6 27 27 H 0.97000 * 119.99995 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2958 1.0846 0.0000 4 6 3.5447 0.7082 -0.0018 5 7 3.5909 -0.6443 -0.0047 6 6 2.2990 -1.0891 -0.0005 7 6 2.2757 -2.6014 0.0014 8 6 3.7064 -3.0046 0.4248 9 6 4.5309 -1.7754 -0.0133 10 1 4.9286 -1.9271 -1.0168 11 6 5.6537 -1.5276 0.9607 12 1 5.7804 -2.1757 1.8152 13 6 6.5195 -0.4732 0.7609 14 7 6.3652 0.3164 -0.2793 15 14 7.9110 -0.1656 1.9687 16 1 8.7988 -1.3552 2.0144 17 1 8.6924 1.0193 1.5323 18 1 7.3476 0.0839 3.3198 19 1 -0.3634 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8897 -0.5141 22 1 4.4005 1.3670 -0.0006 23 1 2.0523 -2.9804 -0.9958 24 1 1.5464 -2.9723 0.7215 25 1 3.7668 -3.1494 1.5035 26 1 4.0312 -3.9001 -0.1050 27 1 6.9745 1.0579 -0.4201 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259808873.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:07 Heat of formation + Delta-G solvation = 34.300482 kcal Electronic energy + Delta-G solvation = -11992.477315 eV Core-core repulsion = 9943.123824 eV Total energy + Delta-G solvation = -2049.353491 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.95074 -37.43130 -34.77942 -32.92925 -30.35864 -29.86275 -26.70070 -25.25338 -22.57314 -21.28055 -20.17736 -18.68333 -17.32912 -16.70346 -16.00473 -15.04556 -14.76657 -14.19056 -14.08010 -13.54581 -13.49149 -13.32319 -13.25410 -12.84717 -12.79118 -12.49456 -12.12280 -11.78955 -11.38147 -10.83543 -10.67399 -9.90081 -8.76576 -8.38493 -6.59613 1.36132 1.38702 1.46445 1.56140 2.28056 2.38560 2.52981 3.11240 3.71457 3.93685 4.10698 4.27706 4.42775 4.69647 4.77349 4.90093 4.95431 5.01956 5.14139 5.18411 5.34258 5.38414 5.55048 5.74175 6.06834 6.22762 6.52545 6.88408 7.16429 7.49512 8.67003 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050223 B = 0.013479 C = 0.011462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.383563 B = 2076.816062 C = 2442.275194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.035 4.035 3 N -0.546 5.546 4 C 0.200 3.800 5 N -0.431 5.431 6 C -0.086 4.086 7 C -0.038 4.038 8 C -0.113 4.113 9 C 0.235 3.765 10 H 0.029 0.971 11 C -0.552 4.552 12 H 0.073 0.927 13 C 0.025 3.975 14 N -0.902 5.902 15 Si 0.967 3.033 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.276 1.276 19 H 0.068 0.932 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.184 0.816 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 -5.737 1.110 8.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.165 4.165 3 N -0.268 5.268 4 C -0.082 4.082 5 N -0.110 5.110 6 C -0.205 4.205 7 C -0.076 4.076 8 C -0.151 4.151 9 C 0.137 3.863 10 H 0.047 0.953 11 C -0.590 4.590 12 H 0.092 0.908 13 C -0.178 4.178 14 N -0.539 5.539 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.201 1.201 19 H 0.087 0.913 20 H 0.080 0.920 21 H 0.102 0.898 22 H 0.201 0.799 23 H 0.111 0.889 24 H 0.120 0.880 25 H 0.091 0.909 26 H 0.121 0.879 27 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.412 -4.782 0.998 7.291 hybrid contribution 1.512 0.043 0.344 1.551 sum -3.901 -4.739 1.342 6.283 Atomic orbital electron populations 1.19935 0.85721 1.02683 1.02183 1.20582 0.97559 0.87162 1.11147 1.70224 1.00919 1.31234 1.24382 1.24661 0.95251 0.82949 1.05322 1.47906 1.08949 1.06732 1.47447 1.23056 0.86665 0.97727 1.13083 1.20630 0.97810 0.85872 1.03280 1.22710 0.93357 0.96927 1.02067 1.19858 0.87868 0.81663 0.96903 0.95307 1.21632 1.11850 1.14585 1.10937 0.90850 1.25928 0.99870 0.95157 0.96823 1.70030 1.38293 1.16964 1.28638 0.85457 0.78575 0.78137 0.78658 1.18585 1.20682 1.20099 0.91289 0.92025 0.89764 0.79896 0.88901 0.87958 0.90878 0.87852 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.51 10.42 71.24 0.74 -0.76 15 2 C -0.03 -1.52 7.09 41.39 0.29 -1.23 15 3 N -0.55 -27.70 11.25 -188.15 -2.12 -29.82 15 4 C 0.20 10.69 11.87 180.18 2.14 12.83 15 5 N -0.43 -21.79 3.19 -491.72 -1.57 -23.35 15 6 C -0.09 -3.75 7.42 41.16 0.31 -3.45 15 7 C -0.04 -1.24 6.84 30.55 0.21 -1.03 15 8 C -0.11 -4.06 6.63 31.59 0.21 -3.85 15 9 C 0.24 11.35 3.30 44.60 0.15 11.50 15 10 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 11 C -0.55 -28.59 8.72 25.60 0.22 -28.36 15 12 H 0.07 3.65 7.60 -2.91 -0.02 3.63 15 13 C 0.03 1.32 5.26 84.66 0.44 1.76 15 14 N -0.90 -49.36 10.56 21.45 0.23 -49.13 15 15 Si 0.97 41.43 29.54 68.60 2.03 43.45 15 16 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 15 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 15 19 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 20 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 21 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.18 10.19 6.40 -2.91 -0.02 10.17 15 23 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 25 H 0.07 2.62 7.77 -2.39 -0.02 2.60 15 26 H 0.10 3.09 8.14 -2.38 -0.02 3.07 15 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 15 Total: -1.00 -62.44 230.48 4.44 -58.00 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 1.15 Total: 13.44 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.71 Total: -12.60 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -3.46 Total: -102.30 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -62.44 4.44 -58.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259808873.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.304 kcal (2) G-P(sol) polarization free energy of solvation -62.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds