Wall clock time and date at job start Mon Mar 30 2020 02:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34892 * 126.02739 * 2 1 4 4 C 1.35461 * 107.77327 * 179.97438 * 3 2 1 5 5 C 1.39859 * 107.91044 * 0.02562 * 4 3 2 6 6 N 1.31038 * 108.13073 * 359.97438 * 5 4 3 7 7 C 1.51318 * 109.50801 * 180.02562 * 5 4 3 8 8 C 1.54332 * 105.22745 * 17.22884 * 7 5 4 9 9 H 1.08999 * 110.93327 * 91.83425 * 8 7 5 10 10 C 1.50695 * 110.77344 * 215.16980 * 8 7 5 11 11 H 1.08004 * 120.00546 * 113.53102 * 10 8 7 12 12 C 1.37885 * 119.99721 * 293.25353 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.51279 * 142.53176 * 180.02562 * 4 3 2 19 19 H 1.08997 * 109.46975 * 269.99578 * 1 2 3 20 20 H 1.08998 * 109.47198 * 29.99898 * 1 2 3 21 21 H 1.09004 * 109.46867 * 149.99598 * 1 2 3 22 22 H 1.08001 * 126.11060 * 0.02562 * 3 2 1 23 23 H 1.09008 * 110.29319 * 258.28994 * 7 5 4 24 24 H 1.09000 * 110.29524 * 136.16788 * 7 5 4 25 25 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 26 26 H 1.08994 * 110.29706 * 43.82782 * 18 4 3 27 27 H 1.09004 * 110.37812 * 281.73385 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2584 1.0909 0.0000 4 6 3.5449 0.6666 0.0006 5 6 3.5365 -0.7320 0.0003 6 7 2.2887 -1.1322 0.0002 7 6 4.9597 -1.2458 0.0016 8 6 5.8236 -0.0457 0.4437 9 1 5.9651 -0.0449 1.5245 10 6 7.1524 -0.0531 -0.2671 11 1 7.3922 0.7293 -0.9719 12 6 8.0644 -1.0555 -0.0132 13 7 7.7745 -2.0055 0.8488 14 14 9.7113 -1.0651 -0.8948 15 1 10.7039 -0.3006 -0.0976 16 1 10.1785 -2.4654 -1.0557 17 1 9.5607 -0.4368 -2.2319 18 6 4.9734 1.1645 0.0014 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 1.9272 2.1189 0.0004 23 1 5.2458 -1.5692 -0.9993 24 1 5.0642 -2.0680 0.7096 25 1 8.4160 -2.7109 1.0270 26 1 5.0873 1.9852 0.7095 27 1 5.2639 1.4858 -0.9989 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259809062.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:14 Heat of formation + Delta-G solvation = 77.257614 kcal Electronic energy + Delta-G solvation = -11557.325671 eV Core-core repulsion = 9509.834942 eV Total energy + Delta-G solvation = -2047.490730 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.71532 -35.86695 -32.63205 -31.12272 -29.47665 -26.51583 -25.82673 -23.95307 -20.40614 -19.17114 -18.69675 -16.33370 -15.78887 -15.02239 -14.53913 -13.80733 -13.45771 -13.16689 -12.18366 -12.00874 -11.92394 -11.52353 -11.29631 -10.89231 -10.60586 -10.42807 -10.00956 -9.55452 -9.25826 -8.94835 -8.50087 -8.39638 -7.50196 -6.00952 -4.04551 2.46796 3.00791 3.33583 3.40566 3.43637 3.55568 4.45706 4.71086 5.19407 5.28826 5.33615 5.46991 5.50973 6.11316 6.36914 6.40548 6.58401 6.92141 7.03586 7.07791 7.25448 7.37832 7.61646 7.66455 7.85630 8.01252 8.43202 8.47736 8.99155 9.60322 11.09161 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.092368 B = 0.008850 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.062446 B = 3162.961847 C = 3329.548755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.395 5.395 3 C 0.041 3.959 4 C -0.250 4.250 5 C 0.065 3.935 6 N -0.303 5.303 7 C -0.015 4.015 8 C 0.058 3.942 9 H 0.040 0.960 10 C -0.514 4.514 11 H 0.061 0.939 12 C 0.063 3.937 13 N -0.888 5.888 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.036 4.036 19 H 0.065 0.935 20 H 0.079 0.921 21 H 0.082 0.918 22 H 0.163 0.837 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.261 0.739 26 H 0.049 0.951 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 4.998 -1.531 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.179 5.179 3 C -0.102 4.102 4 C -0.261 4.261 5 C -0.102 4.102 6 N -0.125 5.125 7 C -0.055 4.055 8 C 0.039 3.961 9 H 0.058 0.942 10 C -0.552 4.552 11 H 0.079 0.921 12 C -0.139 4.139 13 N -0.526 5.526 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.074 4.074 19 H 0.083 0.917 20 H 0.097 0.903 21 H 0.101 0.899 22 H 0.180 0.820 23 H 0.093 0.907 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.881 3.841 -1.451 11.630 hybrid contribution 1.120 0.659 -0.416 1.365 sum -9.760 4.500 -1.867 10.909 Atomic orbital electron populations 1.21612 0.75302 1.03586 1.02445 1.48499 1.05813 1.03559 1.59980 1.21429 0.90596 0.92656 1.05539 1.21461 0.95358 0.96137 1.13135 1.24263 0.94437 0.95884 0.95595 1.77011 1.01292 1.06703 1.27478 1.20976 0.81395 1.01076 1.02044 1.19424 0.92065 0.87524 0.97094 0.94170 1.21111 0.99341 1.10080 1.24682 0.92129 1.25016 0.98318 0.95553 0.94997 1.69965 1.35689 1.13088 1.33862 0.86593 0.84087 0.77178 0.80144 1.20690 1.21275 1.19841 1.20681 0.86932 0.99405 1.00388 0.91675 0.90255 0.89940 0.81959 0.90661 0.91037 0.92878 0.93247 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.85 0.69 1.96 15 2 N -0.40 -6.97 4.01 -68.14 -0.27 -7.25 15 3 C 0.04 0.72 11.49 -17.20 -0.20 0.52 15 4 C -0.25 -5.26 6.87 -104.72 -0.72 -5.98 15 5 C 0.07 1.51 8.10 -82.02 -0.66 0.85 15 6 N -0.30 -6.64 12.58 33.86 0.43 -6.22 15 7 C -0.01 -0.37 5.65 -26.88 -0.15 -0.52 15 8 C 0.06 1.47 2.89 -90.36 -0.26 1.21 15 9 H 0.04 1.09 8.14 -51.93 -0.42 0.67 15 10 C -0.51 -13.88 8.37 -34.44 -0.29 -14.17 15 11 H 0.06 1.60 7.61 -52.48 -0.40 1.20 15 12 C 0.06 1.74 5.36 -17.82 -0.10 1.64 15 13 N -0.89 -25.34 12.72 55.43 0.70 -24.63 15 14 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 15 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 18 C -0.04 -0.78 6.30 -26.88 -0.17 -0.94 15 19 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 20 H 0.08 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.16 2.12 8.06 -52.49 -0.42 1.69 15 23 H 0.08 1.92 7.89 -51.92 -0.41 1.51 15 24 H 0.07 1.86 8.06 -51.93 -0.42 1.45 15 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 27 H 0.06 1.37 7.76 -51.93 -0.40 0.97 15 LS Contribution 235.06 15.07 3.54 3.54 Total: -1.00 -30.94 235.06 -5.78 -36.72 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: -3.30 Total: -2.70 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -1.86 Total: -15.43 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.86 Total: -38.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.94 -5.78 -36.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809062.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.978 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds