Wall clock time and date at job start Mon Mar 30 2020 02:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34892 * 126.02739 * 2 1 4 4 C 1.35461 * 107.77327 * 179.97438 * 3 2 1 5 5 C 1.39859 * 107.91044 * 0.02562 * 4 3 2 6 6 N 1.31038 * 108.13073 * 359.97438 * 5 4 3 7 7 C 1.51318 * 109.50801 * 180.02562 * 5 4 3 8 8 C 1.54332 * 105.22745 * 17.22884 * 7 5 4 9 9 H 1.08999 * 110.93327 * 91.83425 * 8 7 5 10 10 C 1.50695 * 110.77344 * 215.16980 * 8 7 5 11 11 H 1.08004 * 120.00546 * 113.53102 * 10 8 7 12 12 C 1.37885 * 119.99721 * 293.25353 * 10 8 7 13 13 N 1.31514 * 120.00035 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 119.99853 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.51279 * 142.53176 * 180.02562 * 4 3 2 19 19 H 1.08997 * 109.46975 * 269.99578 * 1 2 3 20 20 H 1.08998 * 109.47198 * 29.99898 * 1 2 3 21 21 H 1.09004 * 109.46867 * 149.99598 * 1 2 3 22 22 H 1.08001 * 126.11060 * 0.02562 * 3 2 1 23 23 H 1.09008 * 110.29319 * 258.28994 * 7 5 4 24 24 H 1.09000 * 110.29524 * 136.16788 * 7 5 4 25 25 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 26 26 H 1.08994 * 110.29706 * 43.82782 * 18 4 3 27 27 H 1.09004 * 110.37812 * 281.73385 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2584 1.0909 0.0000 4 6 3.5449 0.6666 0.0006 5 6 3.5365 -0.7320 0.0003 6 7 2.2887 -1.1322 0.0002 7 6 4.9597 -1.2458 0.0016 8 6 5.8236 -0.0457 0.4437 9 1 5.9651 -0.0449 1.5245 10 6 7.1524 -0.0531 -0.2671 11 1 7.3922 0.7293 -0.9719 12 6 8.0644 -1.0555 -0.0132 13 7 7.7745 -2.0055 0.8488 14 14 9.7113 -1.0651 -0.8948 15 1 10.7039 -0.3006 -0.0976 16 1 10.1785 -2.4654 -1.0557 17 1 9.5607 -0.4368 -2.2319 18 6 4.9734 1.1645 0.0014 19 1 -0.3633 -0.0001 1.0276 20 1 -0.3633 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5139 22 1 1.9272 2.1189 0.0004 23 1 5.2458 -1.5692 -0.9993 24 1 5.0642 -2.0680 0.7096 25 1 8.4160 -2.7109 1.0270 26 1 5.0873 1.9852 0.7095 27 1 5.2639 1.4858 -0.9989 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259809062.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:06 Heat of formation + Delta-G solvation = 57.557422 kcal Electronic energy + Delta-G solvation = -11558.179936 eV Core-core repulsion = 9509.834942 eV Total energy + Delta-G solvation = -2048.344994 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 6.02 seconds Orbital eigenvalues (eV) -42.25928 -37.62268 -34.47989 -32.73142 -31.02880 -28.30528 -27.51029 -25.61738 -22.07679 -20.82377 -20.35848 -18.40585 -17.13958 -16.52762 -16.39578 -15.46129 -15.11326 -14.49288 -13.89111 -13.52896 -13.37528 -13.22446 -12.94438 -12.73979 -12.43988 -12.34852 -11.85861 -11.18613 -11.15253 -10.97125 -10.53448 -10.04923 -9.04022 -8.10570 -6.21553 1.00310 1.46961 1.47879 1.58534 1.73777 1.88595 2.47680 3.14383 3.36951 4.07587 4.28969 4.48452 4.49304 4.65096 4.69123 4.70707 4.79147 5.15053 5.19983 5.26434 5.49707 5.58805 5.70753 5.83058 5.93063 6.34766 6.36905 6.85575 6.91703 7.47283 8.99737 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.092368 B = 0.008850 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 303.062446 B = 3162.961847 C = 3329.548755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.383 5.383 3 C 0.074 3.926 4 C -0.282 4.282 5 C 0.032 3.968 6 N -0.333 5.333 7 C -0.002 4.002 8 C 0.051 3.949 9 H 0.008 0.992 10 C -0.529 4.529 11 H 0.065 0.935 12 C 0.012 3.988 13 N -0.923 5.923 14 Si 0.960 3.040 15 H -0.274 1.274 16 H -0.287 1.287 17 H -0.264 1.264 18 C -0.023 4.023 19 H 0.085 0.915 20 H 0.123 0.877 21 H 0.086 0.914 22 H 0.220 0.780 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.262 0.738 26 H 0.064 0.936 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 6.939 -2.292 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.166 5.166 3 C -0.072 4.072 4 C -0.293 4.293 5 C -0.134 4.134 6 N -0.157 5.157 7 C -0.042 4.042 8 C 0.032 3.968 9 H 0.027 0.973 10 C -0.566 4.566 11 H 0.083 0.917 12 C -0.187 4.187 13 N -0.562 5.562 14 Si 0.785 3.215 15 H -0.199 1.199 16 H -0.213 1.213 17 H -0.189 1.189 18 C -0.061 4.061 19 H 0.103 0.897 20 H 0.141 0.859 21 H 0.105 0.895 22 H 0.236 0.764 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.504 5.778 -2.216 13.951 hybrid contribution 1.422 0.069 -0.149 1.431 sum -11.082 5.848 -2.365 12.751 Atomic orbital electron populations 1.22186 0.71373 1.06022 1.04547 1.48993 1.07870 1.02487 1.57209 1.22147 0.88918 0.94675 1.01473 1.21501 0.96489 0.94963 1.16348 1.23835 0.94058 0.97204 0.98269 1.76889 1.01175 1.09287 1.28327 1.20552 0.83865 0.99944 0.99886 1.19350 0.92587 0.89860 0.95047 0.97336 1.21468 1.00278 1.10172 1.24729 0.91653 1.25848 1.02018 0.95141 0.95697 1.70110 1.36914 1.13778 1.35360 0.85527 0.79590 0.77112 0.79266 1.19912 1.21265 1.18872 1.20400 0.87187 0.97914 1.00584 0.89671 0.85920 0.89518 0.76385 0.92598 0.94113 0.92938 0.91693 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 11.47 127.77 1.47 3.22 15 2 N -0.38 -12.20 4.01 -369.48 -1.48 -13.69 15 3 C 0.07 2.27 11.49 83.58 0.96 3.23 15 4 C -0.28 -11.50 6.87 -19.93 -0.14 -11.64 15 5 C 0.03 1.48 8.10 43.27 0.35 1.83 15 6 N -0.33 -14.40 12.58 -46.80 -0.59 -14.99 15 7 C 0.00 -0.12 5.65 30.50 0.17 0.05 15 8 C 0.05 2.67 2.89 -10.62 -0.03 2.64 15 9 H 0.01 0.49 8.14 -2.39 -0.02 0.47 15 10 C -0.53 -29.24 8.37 25.60 0.21 -29.03 15 11 H 0.07 3.46 7.61 -2.91 -0.02 3.44 15 12 C 0.01 0.67 5.36 84.66 0.45 1.12 15 13 N -0.92 -54.69 12.72 21.45 0.27 -54.42 15 14 Si 0.96 43.61 29.54 68.60 2.03 45.64 15 15 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 16 H -0.29 -12.93 7.11 99.48 0.71 -12.23 15 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 15 18 C -0.02 -0.98 6.30 30.50 0.19 -0.78 15 19 H 0.08 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.12 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.09 1.54 8.14 -2.38 -0.02 1.52 15 22 H 0.22 4.18 8.06 -2.91 -0.02 4.16 15 23 H 0.06 3.03 7.89 -2.38 -0.02 3.02 15 24 H 0.04 2.29 8.06 -2.39 -0.02 2.27 15 25 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 26 H 0.06 2.52 8.14 -2.39 -0.02 2.51 15 27 H 0.06 2.73 7.76 -2.38 -0.02 2.71 15 Total: -1.00 -69.71 235.06 5.02 -64.69 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.15 Total: 2.13 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 3.64 Total: -29.36 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.80 Total: -83.10 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -69.71 5.02 -64.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259809062.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.247 kcal (2) G-P(sol) polarization free energy of solvation -69.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.02 seconds