Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47023 * 2 1 4 4 C 1.38386 * 120.00126 * 125.01959 * 3 2 1 5 5 N 1.32127 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.32154 * 119.99532 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99627 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47290 * 305.00631 * 7 6 5 9 9 H 1.08003 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00208 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99660 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99904 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47186 * 90.00225 * 12 10 8 14 14 H 1.48501 * 109.46989 * 209.99888 * 12 10 8 15 15 H 1.48496 * 109.47450 * 330.00147 * 12 10 8 16 16 C 1.38341 * 120.00659 * 0.02562 * 6 5 4 17 17 N 1.32124 * 120.00146 * 305.00128 * 3 2 1 18 18 H 1.08996 * 109.47096 * 60.00048 * 1 2 3 19 19 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47115 * 299.99983 * 1 2 3 21 21 H 1.08997 * 109.47115 * 240.00017 * 2 1 3 22 22 H 1.08996 * 109.47096 * 119.99951 * 2 1 3 23 23 H 1.08001 * 120.00070 * 359.95916 * 4 3 2 24 24 H 1.09000 * 109.47132 * 65.00007 * 7 6 5 25 25 H 1.09002 * 109.47340 * 185.00193 * 7 6 5 26 26 H 0.97001 * 119.99758 * 180.02562 * 11 10 8 27 27 H 1.08001 * 119.99626 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9114 1.8440 0.9815 5 7 3.3522 3.0896 0.9811 6 6 2.9539 3.9311 0.0432 7 6 3.4562 5.3520 0.0431 8 6 3.1649 5.9878 1.3780 9 1 2.6656 5.4199 2.1491 10 6 3.5349 7.2948 1.6145 11 7 4.1415 7.9867 0.6749 12 14 3.1732 8.0831 3.2689 13 1 4.3176 7.8542 4.1871 14 1 2.9685 9.5427 3.0875 15 1 1.9460 7.4793 3.8473 16 6 2.0751 3.5081 -0.9380 17 7 1.6338 2.2625 -0.9373 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.2369 1.1562 1.7479 24 1 4.5315 5.3572 -0.1348 25 1 2.9548 5.9145 -0.7445 26 1 4.4022 8.9061 0.8414 27 1 1.7501 4.1958 -1.7046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822075.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 24.756137 kcal Electronic energy + Delta-G solvation = -11246.952431 eV Core-core repulsion = 9197.185066 eV Total energy + Delta-G solvation = -2049.767364 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48444 -35.02352 -33.05154 -32.97428 -30.72086 -27.50052 -24.78127 -23.74151 -22.42782 -20.71303 -17.16879 -16.18186 -15.81868 -15.22863 -14.59248 -14.35706 -13.67933 -13.32195 -12.46398 -12.18650 -11.88888 -11.49275 -11.36179 -11.13106 -10.87839 -10.77114 -10.71524 -10.38169 -9.91535 -9.47783 -8.54133 -8.25226 -8.20832 -6.06750 -4.08282 1.44023 1.81266 3.31756 3.37353 3.41742 4.29879 4.47091 4.51555 4.91051 4.95040 5.20689 5.29583 5.31813 5.45020 5.69007 5.86795 5.91745 5.97002 6.17176 6.24869 6.33538 7.05811 7.37354 7.43911 7.87851 7.97267 8.23808 8.57364 8.94261 9.54527 11.04299 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064745 B = 0.008287 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.362073 B = 3377.824465 C = 3543.872226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.061 4.061 3 C 0.036 3.964 4 C 0.050 3.950 5 N -0.429 5.429 6 C 0.124 3.876 7 C 0.062 3.938 8 C -0.503 4.503 9 H 0.059 0.941 10 C 0.057 3.943 11 N -0.896 5.896 12 Si 0.899 3.101 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.036 3.964 17 N -0.441 5.441 18 H 0.064 0.936 19 H 0.054 0.946 20 H 0.051 0.949 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.156 0.844 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.263 0.737 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.385 -11.963 -1.315 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.104 4.104 4 C -0.110 4.110 5 N -0.143 5.143 6 C -0.015 4.015 7 C 0.024 3.976 8 C -0.542 4.542 9 H 0.077 0.923 10 C -0.144 4.144 11 N -0.535 5.535 12 Si 0.727 3.273 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.125 4.125 17 N -0.156 5.156 18 H 0.083 0.917 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.173 0.827 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.312 -11.781 -1.351 12.618 hybrid contribution -0.119 0.547 0.916 1.074 sum -4.431 -11.234 -0.435 12.084 Atomic orbital electron populations 1.21668 0.94548 1.01200 1.02658 1.20289 0.96644 0.90387 1.02599 1.22018 0.97416 0.97151 0.93798 1.23613 0.95255 0.94121 0.98038 1.68470 1.21746 1.01671 1.22436 1.23270 0.91379 0.98691 0.88206 1.18325 0.97498 0.82782 0.99015 1.20953 1.38519 0.96660 0.98064 0.92315 1.24979 0.95116 0.97150 0.97133 1.69942 1.40484 1.10124 1.32986 0.86474 0.78757 0.78236 0.83858 1.20530 1.21173 1.19929 1.23637 0.96523 0.92690 0.99630 1.68063 1.21422 1.03231 1.22844 0.91729 0.92671 0.92984 0.90558 0.90576 0.82709 0.93693 0.94107 0.92777 0.81880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.78 37.16 0.36 -1.27 15 2 C -0.06 -0.73 6.35 -27.88 -0.18 -0.90 15 3 C 0.04 0.60 6.18 -82.41 -0.51 0.09 15 4 C 0.05 0.89 10.85 -17.37 -0.19 0.70 15 5 N -0.43 -9.43 10.14 -9.29 -0.09 -9.53 15 6 C 0.12 2.78 6.12 -82.41 -0.50 2.27 15 7 C 0.06 1.58 5.39 -29.03 -0.16 1.42 15 8 C -0.50 -14.25 8.92 -34.44 -0.31 -14.55 15 9 H 0.06 1.69 7.69 -52.48 -0.40 1.29 15 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 11 N -0.90 -26.27 13.29 55.43 0.74 -25.53 15 12 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 15 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 15 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 16 C 0.04 0.70 10.85 -17.38 -0.19 0.51 15 17 N -0.44 -8.08 10.06 -9.29 -0.09 -8.17 15 18 H 0.06 0.81 7.96 -51.93 -0.41 0.40 15 19 H 0.05 0.50 8.14 -51.93 -0.42 0.07 15 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.08 0.74 7.89 -51.93 -0.41 0.33 15 23 H 0.16 2.15 7.95 -52.49 -0.42 1.73 15 24 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.04 1.04 7.89 -51.93 -0.41 0.63 15 26 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 27 H 0.16 2.82 7.95 -52.49 -0.42 2.40 15 LS Contribution 242.43 15.07 3.65 3.65 Total: -1.00 -30.80 242.43 -5.88 -36.68 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -3.30 Total: -3.69 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.77 Total: -10.18 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.55 Total: -43.23 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.80 -5.88 -36.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822075.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.435 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds