Wall clock time and date at job start Mon Mar 30 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47023 * 2 1 4 4 C 1.38386 * 120.00126 * 125.01959 * 3 2 1 5 5 N 1.32127 * 119.99894 * 179.97438 * 4 3 2 6 6 C 1.32154 * 119.99532 * 359.97438 * 5 4 3 7 7 C 1.50705 * 119.99627 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47290 * 305.00631 * 7 6 5 9 9 H 1.08003 * 119.99503 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00208 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99660 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99904 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47186 * 90.00225 * 12 10 8 14 14 H 1.48501 * 109.46989 * 209.99888 * 12 10 8 15 15 H 1.48496 * 109.47450 * 330.00147 * 12 10 8 16 16 C 1.38341 * 120.00659 * 0.02562 * 6 5 4 17 17 N 1.32124 * 120.00146 * 305.00128 * 3 2 1 18 18 H 1.08996 * 109.47096 * 60.00048 * 1 2 3 19 19 H 1.08996 * 109.47094 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47115 * 299.99983 * 1 2 3 21 21 H 1.08997 * 109.47115 * 240.00017 * 2 1 3 22 22 H 1.08996 * 109.47096 * 119.99951 * 2 1 3 23 23 H 1.08001 * 120.00070 * 359.95916 * 4 3 2 24 24 H 1.09000 * 109.47132 * 65.00007 * 7 6 5 25 25 H 1.09002 * 109.47340 * 185.00193 * 7 6 5 26 26 H 0.97001 * 119.99758 * 180.02562 * 11 10 8 27 27 H 1.08001 * 119.99626 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9114 1.8440 0.9815 5 7 3.3522 3.0896 0.9811 6 6 2.9539 3.9311 0.0432 7 6 3.4562 5.3520 0.0431 8 6 3.1649 5.9878 1.3780 9 1 2.6656 5.4199 2.1491 10 6 3.5349 7.2948 1.6145 11 7 4.1415 7.9867 0.6749 12 14 3.1732 8.0831 3.2689 13 1 4.3176 7.8542 4.1871 14 1 2.9685 9.5427 3.0875 15 1 1.9460 7.4793 3.8473 16 6 2.0751 3.5081 -0.9380 17 7 1.6338 2.2625 -0.9373 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 3.2369 1.1562 1.7479 24 1 4.5315 5.3572 -0.1348 25 1 2.9548 5.9145 -0.7445 26 1 4.4022 8.9061 0.8414 27 1 1.7501 4.1958 -1.7046 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259822075.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:14 Heat of formation + Delta-G solvation = 4.453532 kcal Electronic energy + Delta-G solvation = -11247.832818 eV Core-core repulsion = 9197.185066 eV Total energy + Delta-G solvation = -2050.647751 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97077 -36.50344 -34.99148 -34.34972 -32.36060 -29.18062 -26.42198 -25.27945 -23.94649 -22.15905 -18.85536 -18.16307 -17.25378 -16.80921 -16.15880 -15.93563 -14.86625 -14.61617 -14.29212 -13.76667 -13.60314 -13.09726 -12.71271 -12.65607 -12.47879 -12.27551 -12.13032 -11.90475 -11.78909 -11.54943 -10.64798 -9.79577 -9.78848 -8.22901 -6.32562 -0.03478 0.30285 1.39262 1.40637 1.51509 2.39301 2.84687 3.10274 3.21852 3.47158 3.65201 3.92559 4.25385 4.42724 4.43462 4.53810 4.70652 4.90917 5.07028 5.21210 5.23225 5.35782 5.41452 5.62354 5.69902 6.10997 6.50146 6.74812 7.04287 7.34327 8.88151 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064745 B = 0.008287 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.362073 B = 3377.824465 C = 3543.872226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C 0.052 3.948 4 C 0.047 3.953 5 N -0.462 5.462 6 C 0.090 3.910 7 C 0.070 3.930 8 C -0.521 4.521 9 H 0.048 0.952 10 C 0.007 3.993 11 N -0.927 5.927 12 Si 0.966 3.034 13 H -0.273 1.273 14 H -0.276 1.276 15 H -0.270 1.270 16 C 0.036 3.964 17 N -0.447 5.447 18 H 0.047 0.953 19 H 0.085 0.915 20 H 0.042 0.958 21 H 0.092 0.908 22 H 0.109 0.891 23 H 0.196 0.804 24 H 0.015 0.985 25 H 0.031 0.969 26 H 0.267 0.733 27 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.278 -13.904 -0.379 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.089 4.089 4 C -0.114 4.114 5 N -0.177 5.177 6 C -0.048 4.048 7 C 0.032 3.968 8 C -0.559 4.559 9 H 0.067 0.933 10 C -0.192 4.192 11 N -0.567 5.567 12 Si 0.790 3.210 13 H -0.199 1.199 14 H -0.201 1.201 15 H -0.195 1.195 16 C -0.123 4.123 17 N -0.162 5.162 18 H 0.066 0.934 19 H 0.103 0.897 20 H 0.062 0.938 21 H 0.111 0.889 22 H 0.127 0.873 23 H 0.213 0.787 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.208 -13.702 -0.438 14.665 hybrid contribution 0.136 0.970 0.615 1.156 sum -5.072 -12.732 0.177 13.707 Atomic orbital electron populations 1.21660 0.93996 1.02824 1.01408 1.20524 0.96961 0.87277 1.05023 1.22886 0.95298 0.98847 0.91911 1.24296 0.94921 0.93002 0.99181 1.68305 1.22943 1.03572 1.22912 1.22739 0.94006 0.97577 0.90485 1.18008 0.95667 0.85384 0.97700 1.21201 1.38605 0.97187 0.98946 0.93342 1.25838 0.94786 0.97641 1.00889 1.70047 1.41209 1.10550 1.34937 0.85436 0.78700 0.77550 0.79272 1.19891 1.20112 1.19466 1.23688 0.95793 0.93657 0.99142 1.68214 1.21571 1.02752 1.23651 0.93404 0.89660 0.93848 0.88942 0.87282 0.78712 0.96723 0.95035 0.92435 0.80575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.78 71.98 0.70 -2.01 15 2 C -0.06 -1.17 6.35 29.85 0.19 -0.98 15 3 C 0.05 1.59 6.18 42.55 0.26 1.85 15 4 C 0.05 1.57 10.85 84.68 0.92 2.49 15 5 N -0.46 -20.33 10.14 -183.29 -1.86 -22.19 15 6 C 0.09 4.14 6.12 42.54 0.26 4.40 15 7 C 0.07 3.78 5.39 29.10 0.16 3.94 15 8 C -0.52 -30.34 8.92 25.60 0.23 -30.11 15 9 H 0.05 2.85 7.69 -2.91 -0.02 2.83 15 10 C 0.01 0.39 5.46 84.66 0.46 0.85 15 11 N -0.93 -55.53 13.29 21.45 0.28 -55.25 15 12 Si 0.97 45.00 29.54 68.60 2.03 47.03 15 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 15 14 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 15 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 16 C 0.04 1.41 10.85 84.67 0.92 2.33 15 17 N -0.45 -15.77 10.06 -183.30 -1.84 -17.61 15 18 H 0.05 1.08 7.96 -2.39 -0.02 1.06 15 19 H 0.08 1.15 8.14 -2.39 -0.02 1.14 15 20 H 0.04 0.90 8.14 -2.39 -0.02 0.88 15 21 H 0.09 1.62 8.14 -2.39 -0.02 1.61 15 22 H 0.11 1.49 7.89 -2.39 -0.02 1.47 15 23 H 0.20 4.66 7.95 -2.91 -0.02 4.64 15 24 H 0.01 0.86 8.14 -2.39 -0.02 0.84 15 25 H 0.03 1.69 7.89 -2.39 -0.02 1.68 15 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 15 27 H 0.18 6.20 7.95 -2.91 -0.02 6.18 15 Total: -1.00 -67.53 242.43 3.86 -63.67 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.15 Total: 1.60 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 4.10 Total: -17.25 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.42 Total: -95.05 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -67.53 3.86 -63.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822075.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.120 kcal (2) G-P(sol) polarization free energy of solvation -67.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds