Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31806 * 119.12472 * 2 1 4 4 C 1.32318 * 120.81865 * 180.02562 * 3 2 1 5 5 C 1.38624 * 119.10205 * 0.02562 * 4 3 2 6 6 C 1.38578 * 118.39971 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44586 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47055 * 124.99629 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47216 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 119.99848 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99829 * 13 11 9 17 17 N 1.31784 * 119.11978 * 180.29616 * 2 1 3 18 18 H 1.09003 * 109.46869 * 89.99926 * 1 2 3 19 19 H 1.08995 * 109.46909 * 209.99938 * 1 2 3 20 20 H 1.09001 * 109.46565 * 330.00260 * 1 2 3 21 21 H 1.08005 * 120.44992 * 180.02562 * 4 3 2 22 22 H 1.08004 * 120.79656 * 179.97438 * 5 4 3 23 23 H 1.09001 * 109.47328 * 4.99899 * 7 6 5 24 24 H 1.09004 * 109.47043 * 244.99709 * 7 6 5 25 25 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 26 26 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 27 27 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0032 8 6 3.7156 -3.3575 1.1777 9 6 4.4400 -4.6791 1.1767 10 1 5.1703 -4.8939 0.4107 11 6 4.1704 -5.6137 2.1538 12 7 3.2806 -5.3522 3.0863 13 14 5.0688 -7.2515 2.1530 14 1 6.0113 -7.2985 1.0065 15 1 5.8247 -7.4021 3.4223 16 1 4.0841 -8.3562 2.0292 17 7 2.1484 -1.1513 -0.0060 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3632 0.8900 0.5138 21 1 3.9908 2.1374 -0.0001 22 1 5.2609 -0.0003 -0.0024 23 1 5.2684 -2.3380 0.0868 24 1 3.9903 -3.0386 -0.9351 25 1 2.6433 -3.5313 1.0876 26 1 3.9212 -2.8307 2.1095 27 1 3.0912 -6.0097 3.7739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259822111.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = 26.288405 kcal Electronic energy + Delta-G solvation = -11202.171268 eV Core-core repulsion = 9152.470347 eV Total energy + Delta-G solvation = -2049.700920 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.66562 -34.88188 -33.08173 -32.78580 -30.27696 -28.21497 -25.82821 -23.31616 -22.10269 -20.47064 -17.19663 -16.43963 -15.65086 -14.90295 -14.84248 -14.41567 -13.44250 -12.99363 -12.71088 -12.36668 -12.19942 -12.06525 -11.23016 -10.98275 -10.67775 -10.54001 -10.32748 -9.87351 -9.60402 -9.13888 -8.93281 -8.70050 -8.34418 -5.99885 -4.03271 1.26191 1.48448 3.31262 3.38617 3.42358 4.09678 4.26472 4.44441 4.48559 4.90968 5.33834 5.36107 5.50606 5.61378 5.69691 5.73596 6.01762 6.16123 6.38572 6.49186 6.73957 6.97552 7.42834 7.66427 7.82818 8.01076 8.37934 8.52117 9.03827 9.60609 11.11378 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.062809 B = 0.007944 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.687102 B = 3523.608693 C = 3803.850877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.311 3.689 3 N -0.539 5.539 4 C 0.143 3.857 5 C -0.243 4.243 6 C 0.202 3.798 7 C -0.072 4.072 8 C 0.032 3.968 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.284 1.284 17 N -0.508 5.508 18 H 0.081 0.919 19 H 0.086 0.914 20 H 0.080 0.920 21 H 0.162 0.838 22 H 0.143 0.857 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.032 0.968 26 H 0.013 0.987 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 10.184 -5.844 11.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.044 3.956 3 N -0.255 5.255 4 C -0.022 4.022 5 C -0.265 4.265 6 C 0.056 3.944 7 C -0.110 4.110 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.075 0.925 11 C -0.144 4.144 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.223 5.223 18 H 0.099 0.901 19 H 0.105 0.895 20 H 0.099 0.901 21 H 0.179 0.821 22 H 0.161 0.839 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.031 0.969 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.700 10.107 -5.697 11.726 hybrid contribution 1.520 -0.844 0.166 1.747 sum -0.180 9.263 -5.531 10.790 Atomic orbital electron populations 1.20518 0.86194 1.03973 1.03398 1.23266 0.98112 0.83659 0.90567 1.68178 1.10122 1.30708 1.16490 1.23078 0.89848 0.98309 0.91004 1.22801 1.02776 0.94395 1.06539 1.22350 0.89373 0.96880 0.85759 1.20920 0.97574 0.89463 1.03027 1.19036 0.97755 0.93143 0.90618 1.21253 1.22853 1.00291 1.11715 0.92461 1.25018 0.95245 0.98590 0.95517 1.69996 1.33132 1.35197 1.14877 0.86523 0.79637 0.83876 0.77880 1.19697 1.21039 1.20978 1.68197 1.10120 1.29750 1.14268 0.90069 0.89495 0.90089 0.82106 0.83894 0.91063 0.90422 0.94994 0.96909 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.32 36.01 0.37 -0.73 15 2 C 0.31 5.46 7.64 -157.19 -1.20 4.26 15 3 N -0.54 -8.91 10.33 -10.72 -0.11 -9.02 15 4 C 0.14 2.07 11.31 -17.20 -0.19 1.88 15 5 C -0.24 -3.82 9.80 -39.31 -0.39 -4.20 15 6 C 0.20 3.91 6.20 -82.25 -0.51 3.40 15 7 C -0.07 -1.50 5.59 -27.89 -0.16 -1.66 15 8 C 0.03 0.85 4.84 -27.88 -0.14 0.71 15 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 15 10 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 11 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 12 N -0.89 -27.20 13.29 55.43 0.74 -26.46 15 13 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 14 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 15 17 N -0.51 -10.28 9.94 -6.99 -0.07 -10.34 15 18 H 0.08 0.94 8.14 -51.93 -0.42 0.51 15 19 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 20 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.16 1.66 8.06 -52.48 -0.42 1.23 15 22 H 0.14 1.82 8.01 -52.48 -0.42 1.40 15 23 H 0.07 1.34 7.94 -51.93 -0.41 0.93 15 24 H 0.08 1.59 8.14 -51.93 -0.42 1.16 15 25 H 0.03 0.92 7.98 -51.93 -0.41 0.50 15 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.10 15 LS Contribution 243.44 15.07 3.67 3.67 Total: -1.00 -32.32 243.44 -6.74 -39.06 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -3.33 Total: -3.63 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.62 Total: -9.88 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.56 Total: -45.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.32 -6.74 -39.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822111.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.351 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds