Wall clock time and date at job start Mon Mar 30 2020 02:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31806 * 119.12472 * 2 1 4 4 C 1.32318 * 120.81865 * 180.02562 * 3 2 1 5 5 C 1.38624 * 119.10205 * 0.02562 * 4 3 2 6 6 C 1.38578 * 118.39971 * 0.02562 * 5 4 3 7 7 C 1.50696 * 120.44586 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47055 * 124.99629 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47216 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47389 * 119.99848 * 13 11 9 16 16 H 1.48501 * 109.47057 * 239.99829 * 13 11 9 17 17 N 1.31784 * 119.11978 * 180.29616 * 2 1 3 18 18 H 1.09003 * 109.46869 * 89.99926 * 1 2 3 19 19 H 1.08995 * 109.46909 * 209.99938 * 1 2 3 20 20 H 1.09001 * 109.46565 * 330.00260 * 1 2 3 21 21 H 1.08005 * 120.44992 * 180.02562 * 4 3 2 22 22 H 1.08004 * 120.79656 * 179.97438 * 5 4 3 23 23 H 1.09001 * 109.47328 * 4.99899 * 7 6 5 24 24 H 1.09004 * 109.47043 * 244.99709 * 7 6 5 25 25 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 26 26 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 27 27 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0003 -0.0016 6 6 3.4712 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0032 8 6 3.7156 -3.3575 1.1777 9 6 4.4400 -4.6791 1.1767 10 1 5.1703 -4.8939 0.4107 11 6 4.1704 -5.6137 2.1538 12 7 3.2806 -5.3522 3.0863 13 14 5.0688 -7.2515 2.1530 14 1 6.0113 -7.2985 1.0065 15 1 5.8247 -7.4021 3.4223 16 1 4.0841 -8.3562 2.0292 17 7 2.1484 -1.1513 -0.0060 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3632 0.8900 0.5138 21 1 3.9908 2.1374 -0.0001 22 1 5.2609 -0.0003 -0.0024 23 1 5.2684 -2.3380 0.0868 24 1 3.9903 -3.0386 -0.9351 25 1 2.6433 -3.5313 1.0876 26 1 3.9212 -2.8307 2.1095 27 1 3.0912 -6.0097 3.7739 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259822111.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:16 Heat of formation + Delta-G solvation = 5.349875 kcal Electronic energy + Delta-G solvation = -11203.079230 eV Core-core repulsion = 9152.470347 eV Total energy + Delta-G solvation = -2050.608883 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.96502 -36.54867 -34.75871 -34.28284 -32.08276 -29.43022 -27.69558 -24.87400 -23.57500 -22.18688 -18.63266 -18.44472 -16.99250 -16.55392 -16.13235 -16.04906 -15.04871 -14.68498 -14.10167 -14.00464 -13.57038 -13.28781 -13.03713 -12.88135 -12.49497 -12.14147 -11.85852 -11.65894 -11.36270 -11.20103 -10.58197 -10.24030 -10.08293 -8.20289 -6.32847 -0.01328 0.18764 1.41211 1.42064 1.55517 2.41077 2.80470 3.07925 3.13410 3.23288 3.66948 4.13522 4.22108 4.45548 4.59863 4.62604 4.67582 4.72707 4.98960 5.04894 5.10904 5.46332 5.57206 5.65712 5.82709 6.16084 6.19126 6.84656 7.21696 7.37043 8.92279 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.062809 B = 0.007944 C = 0.007359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.687102 B = 3523.608693 C = 3803.850877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.294 3.706 3 N -0.543 5.543 4 C 0.150 3.850 5 C -0.235 4.235 6 C 0.169 3.831 7 C -0.059 4.059 8 C 0.041 3.959 9 C -0.542 4.542 10 H 0.069 0.931 11 C -0.003 4.003 12 N -0.937 5.937 13 Si 0.970 3.030 14 H -0.257 1.257 15 H -0.278 1.278 16 H -0.280 1.280 17 N -0.550 5.550 18 H 0.100 0.900 19 H 0.077 0.923 20 H 0.099 0.901 21 H 0.211 0.789 22 H 0.176 0.824 23 H 0.093 0.907 24 H 0.076 0.924 25 H -0.007 1.007 26 H -0.019 1.019 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 10.999 -6.652 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.027 3.973 3 N -0.259 5.259 4 C -0.016 4.016 5 C -0.256 4.256 6 C 0.024 3.976 7 C -0.097 4.097 8 C 0.004 3.996 9 C -0.580 4.580 10 H 0.087 0.913 11 C -0.200 4.200 12 N -0.577 5.577 13 Si 0.795 3.205 14 H -0.180 1.180 15 H -0.204 1.204 16 H -0.206 1.206 17 N -0.266 5.266 18 H 0.118 0.882 19 H 0.096 0.904 20 H 0.118 0.882 21 H 0.228 0.772 22 H 0.194 0.806 23 H 0.112 0.888 24 H 0.094 0.906 25 H 0.012 0.988 26 H 0.000 1.000 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.337 10.929 -6.521 12.731 hybrid contribution 1.071 -1.001 0.419 1.525 sum 0.734 9.928 -6.102 11.677 Atomic orbital electron populations 1.20620 0.84062 1.04394 1.04734 1.23890 0.99639 0.83350 0.90396 1.68299 1.11294 1.29928 1.16358 1.23902 0.89246 0.99824 0.88616 1.23097 1.04366 0.93249 1.04909 1.22241 0.89684 0.97406 0.88258 1.20654 0.98897 0.89888 1.00270 1.18798 0.95450 0.93648 0.91726 1.21726 1.23088 1.01171 1.12000 0.91263 1.26048 0.96018 1.02979 0.94971 1.70148 1.34895 1.36831 1.15807 0.85320 0.78418 0.78332 0.78479 1.18028 1.20381 1.20619 1.68129 1.11094 1.31607 1.15806 0.88193 0.90432 0.88204 0.77244 0.80635 0.88819 0.90566 0.98807 1.00032 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 10.32 71.24 0.74 -1.37 15 2 C 0.29 10.20 7.64 138.75 1.06 11.26 15 3 N -0.54 -16.86 10.33 -187.82 -1.94 -18.80 15 4 C 0.15 3.86 11.31 84.71 0.96 4.82 15 5 C -0.23 -6.81 9.80 22.44 0.22 -6.59 15 6 C 0.17 6.50 6.20 42.56 0.26 6.77 15 7 C -0.06 -2.49 5.59 29.85 0.17 -2.32 15 8 C 0.04 2.27 4.84 29.85 0.14 2.42 15 9 C -0.54 -31.05 9.11 25.60 0.23 -30.82 15 10 H 0.07 3.71 7.74 -2.91 -0.02 3.68 15 11 C 0.00 -0.16 5.46 84.65 0.46 0.31 15 12 N -0.94 -58.54 13.29 21.45 0.28 -58.26 15 13 Si 0.97 44.42 29.54 68.60 2.03 46.45 15 14 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 15 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 17 N -0.55 -22.65 9.94 -176.03 -1.75 -24.40 15 18 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 19 H 0.08 2.15 8.14 -2.39 -0.02 2.14 15 20 H 0.10 2.19 8.14 -2.39 -0.02 2.18 15 21 H 0.21 3.24 8.06 -2.91 -0.02 3.21 15 22 H 0.18 3.81 8.01 -2.91 -0.02 3.78 15 23 H 0.09 3.43 7.94 -2.39 -0.02 3.41 15 24 H 0.08 3.15 8.14 -2.38 -0.02 3.13 15 25 H -0.01 -0.40 7.98 -2.39 -0.02 -0.42 15 26 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 15 27 H 0.26 15.36 8.31 -92.71 -0.77 14.59 15 Total: -1.00 -71.68 243.44 4.01 -67.67 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.15 Total: 2.88 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 4.24 Total: -15.54 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.41 Total: -101.46 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -71.68 4.01 -67.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259822111.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.023 kcal (2) G-P(sol) polarization free energy of solvation -71.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds