Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47256 * 2 1 4 4 N 1.31725 * 119.86965 * 89.99468 * 3 2 1 5 5 C 1.33906 * 119.80883 * 180.02562 * 4 3 2 6 6 C 1.41356 * 120.20502 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99609 * 173.74173 * 6 5 4 8 8 C 1.40072 * 120.00355 * 353.74333 * 6 5 4 9 9 N 1.30721 * 119.99614 * 6.26076 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 186.25863 * 8 6 5 11 11 H 1.48492 * 109.47058 * 90.00335 * 10 8 6 12 12 H 1.48502 * 109.46682 * 210.00103 * 10 8 6 13 13 H 1.48497 * 109.47202 * 329.99666 * 10 8 6 14 14 C 1.40800 * 119.58279 * 0.02562 * 5 4 3 15 15 N 1.31799 * 119.74266 * 359.97438 * 14 5 4 16 16 C 1.32366 * 120.17514 * 359.97438 * 15 14 5 17 17 C 1.50700 * 119.78360 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46879 * 60.00013 * 1 2 3 19 19 H 1.08998 * 109.47226 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47302 * 300.00249 * 1 2 3 21 21 H 1.09002 * 109.47056 * 239.99754 * 2 1 3 22 22 H 1.09000 * 109.46879 * 119.99987 * 2 1 3 23 23 H 0.97002 * 119.99457 * 179.97438 * 9 8 6 24 24 H 1.08005 * 120.12959 * 179.97438 * 14 5 4 25 25 H 1.09000 * 109.47533 * 270.02951 * 17 16 15 26 26 H 1.09009 * 109.47149 * 30.02462 * 17 16 15 27 27 H 1.09001 * 109.47395 * 150.02345 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2510 2.0393 1.1423 5 6 2.6969 3.3020 1.1408 6 6 2.9337 3.9739 2.3617 7 1 3.3879 4.9538 2.3595 8 6 2.5795 3.3689 3.5744 9 7 2.1439 2.1365 3.5872 10 14 2.7295 4.3233 5.1732 11 1 1.4567 5.0385 5.4440 12 1 3.0153 3.3826 6.2861 13 1 3.8359 5.3073 5.0603 14 6 2.9272 3.9564 -0.0843 15 7 2.7028 3.3213 -1.2172 16 6 2.2630 2.0729 -1.2043 17 6 2.0088 1.3553 -2.5048 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8990 1.7174 4.4270 24 1 3.2864 4.9749 -0.0958 25 1 0.9784 1.5241 -2.8176 26 1 2.6873 1.7359 -3.2685 27 1 2.1770 0.2869 -2.3692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = 21.324722 kcal Electronic energy + Delta-G solvation = -11718.471654 eV Core-core repulsion = 9668.555493 eV Total energy + Delta-G solvation = -2049.916162 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.11962 -34.39985 -33.59065 -31.95634 -29.61425 -28.13864 -24.54754 -23.68944 -21.24345 -20.26566 -17.54003 -15.98430 -15.13438 -14.30296 -14.14176 -13.53956 -13.22092 -12.84152 -11.99047 -11.79722 -11.58973 -11.51015 -11.33989 -11.20523 -10.89430 -10.69977 -10.29524 -10.00138 -9.68506 -9.43377 -8.91255 -7.59500 -7.36786 -6.48322 -4.63938 2.51964 2.97910 3.02635 3.05853 3.19125 3.85231 4.62633 5.52678 5.65015 5.68987 5.81187 6.03816 6.09471 6.23053 6.35999 6.43602 6.53225 6.56263 6.68498 6.81364 6.87000 7.00060 7.11993 7.35097 7.73096 8.06390 8.45229 8.69033 9.30903 9.90470 10.15523 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048504 B = 0.012438 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.139175 B = 2250.563218 C = 2737.497940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C 0.116 3.884 4 N -0.451 5.451 5 C 0.206 3.794 6 C -0.417 4.417 7 H 0.089 0.911 8 C 0.066 3.934 9 N -0.711 5.711 10 Si 0.912 3.088 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.260 1.260 14 C -0.067 4.067 15 N -0.429 5.429 16 C -0.097 4.097 17 C -0.068 4.068 18 H 0.048 0.952 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.276 0.724 24 H 0.132 0.868 25 H 0.046 0.954 26 H 0.051 0.949 27 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.591 -2.413 -1.213 3.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.033 4.033 4 N -0.168 5.168 5 C 0.080 3.920 6 C -0.449 4.449 7 H 0.107 0.893 8 C -0.160 4.160 9 N -0.331 5.331 10 Si 0.736 3.264 11 H -0.193 1.193 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.237 4.237 15 N -0.141 5.141 16 C -0.236 4.236 17 C -0.126 4.126 18 H 0.067 0.933 19 H 0.067 0.933 20 H 0.076 0.924 21 H 0.085 0.915 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.149 0.851 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.664 -2.610 -1.063 3.273 hybrid contribution 0.061 0.532 0.804 0.966 sum -1.604 -2.077 -0.259 2.637 Atomic orbital electron populations 1.21598 0.95403 1.00416 1.01947 1.20309 0.95577 0.92726 1.01753 1.21814 0.94875 0.96221 0.90381 1.69366 1.14826 1.08290 1.24350 1.19419 0.89995 0.89234 0.93347 1.19633 1.33316 1.02626 0.89294 0.89253 1.26141 0.93806 0.94857 1.01215 1.70100 1.24401 1.10735 1.27897 0.86245 0.79833 0.80147 0.80190 1.19265 1.20029 1.18360 1.23127 1.11064 1.00423 0.89058 1.67502 1.07652 1.07954 1.31004 1.20953 1.14130 0.93633 0.94837 1.20228 1.00061 0.98179 0.94102 0.93287 0.93289 0.92413 0.91518 0.91002 0.91310 0.85077 0.93478 0.93033 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.90 37.16 0.37 -2.01 15 2 C -0.07 -1.28 5.83 -27.88 -0.16 -1.45 15 3 C 0.12 2.86 6.04 -82.40 -0.50 2.36 15 4 N -0.45 -12.49 8.00 -7.19 -0.06 -12.54 15 5 C 0.21 5.72 6.54 -84.81 -0.55 5.17 15 6 C -0.42 -10.99 9.16 -37.71 -0.35 -11.34 15 7 H 0.09 2.17 7.86 -52.48 -0.41 1.76 15 8 C 0.07 1.65 5.49 -17.34 -0.10 1.55 15 9 N -0.71 -18.54 11.52 55.55 0.64 -17.90 15 10 Si 0.91 18.13 29.57 -169.99 -5.03 13.11 15 11 H -0.27 -5.27 7.11 56.52 0.40 -4.87 15 12 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 14 C -0.07 -1.74 10.99 -16.60 -0.18 -1.92 15 15 N -0.43 -11.03 10.40 -8.58 -0.09 -11.12 15 16 C -0.10 -2.32 6.80 -82.13 -0.56 -2.88 15 17 C -0.07 -1.28 9.77 36.01 0.35 -0.92 15 18 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 19 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 20 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 21 H 0.07 1.14 5.93 -51.93 -0.31 0.83 15 22 H 0.07 1.46 8.14 -51.93 -0.42 1.04 15 23 H 0.28 6.48 8.29 -40.82 -0.34 6.15 15 24 H 0.13 3.09 8.06 -52.48 -0.42 2.67 15 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.05 0.93 8.14 -51.92 -0.42 0.51 15 27 H 0.06 0.94 5.93 -51.93 -0.31 0.63 15 LS Contribution 236.23 15.07 3.56 3.56 Total: -1.00 -29.67 236.23 -5.77 -35.44 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -3.12 Total: 0.91 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -1.68 Total: -11.45 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.49 Total: -41.56 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.67 -5.77 -35.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.763 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds