Wall clock time and date at job start Mon Mar 30 2020 02:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47256 * 2 1 4 4 N 1.31725 * 119.86965 * 89.99468 * 3 2 1 5 5 C 1.33906 * 119.80883 * 180.02562 * 4 3 2 6 6 C 1.41356 * 120.20502 * 179.97438 * 5 4 3 7 7 H 1.08005 * 119.99609 * 173.74173 * 6 5 4 8 8 C 1.40072 * 120.00355 * 353.74333 * 6 5 4 9 9 N 1.30721 * 119.99614 * 6.26076 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 186.25863 * 8 6 5 11 11 H 1.48492 * 109.47058 * 90.00335 * 10 8 6 12 12 H 1.48502 * 109.46682 * 210.00103 * 10 8 6 13 13 H 1.48497 * 109.47202 * 329.99666 * 10 8 6 14 14 C 1.40800 * 119.58279 * 0.02562 * 5 4 3 15 15 N 1.31799 * 119.74266 * 359.97438 * 14 5 4 16 16 C 1.32366 * 120.17514 * 359.97438 * 15 14 5 17 17 C 1.50700 * 119.78360 * 179.97438 * 16 15 14 18 18 H 1.09000 * 109.46879 * 60.00013 * 1 2 3 19 19 H 1.08998 * 109.47226 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47302 * 300.00249 * 1 2 3 21 21 H 1.09002 * 109.47056 * 239.99754 * 2 1 3 22 22 H 1.09000 * 109.46879 * 119.99987 * 2 1 3 23 23 H 0.97002 * 119.99457 * 179.97438 * 9 8 6 24 24 H 1.08005 * 120.12959 * 179.97438 * 14 5 4 25 25 H 1.09000 * 109.47533 * 270.02951 * 17 16 15 26 26 H 1.09009 * 109.47149 * 30.02462 * 17 16 15 27 27 H 1.09001 * 109.47395 * 150.02345 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2510 2.0393 1.1423 5 6 2.6969 3.3020 1.1408 6 6 2.9337 3.9739 2.3617 7 1 3.3879 4.9538 2.3595 8 6 2.5795 3.3689 3.5744 9 7 2.1439 2.1365 3.5872 10 14 2.7295 4.3233 5.1732 11 1 1.4567 5.0385 5.4440 12 1 3.0153 3.3826 6.2861 13 1 3.8359 5.3073 5.0603 14 6 2.9272 3.9564 -0.0843 15 7 2.7028 3.3213 -1.2172 16 6 2.2630 2.0729 -1.2043 17 6 2.0088 1.3553 -2.5048 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8990 1.7174 4.4270 24 1 3.2864 4.9749 -0.0958 25 1 0.9784 1.5241 -2.8176 26 1 2.6873 1.7359 -3.2685 27 1 2.1770 0.2869 -2.3692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827436.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:19 Heat of formation + Delta-G solvation = 2.270067 kcal Electronic energy + Delta-G solvation = -11719.297926 eV Core-core repulsion = 9668.555493 eV Total energy + Delta-G solvation = -2050.742434 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.02589 -36.23863 -35.36703 -33.84408 -31.30132 -29.96752 -26.34757 -25.43334 -23.08270 -22.05522 -19.47239 -17.84780 -16.97709 -16.13479 -15.81775 -15.32376 -14.78796 -14.50157 -13.57684 -13.46712 -13.20985 -13.20154 -13.01452 -12.82136 -12.63132 -12.25996 -11.89766 -11.62890 -11.51791 -11.39731 -10.83081 -9.51429 -9.29734 -8.37070 -6.62082 0.62388 1.10400 1.39499 1.52098 1.54622 2.18498 2.74910 3.73409 3.83449 3.99643 4.21693 4.40919 4.58435 4.59764 4.76876 4.85178 4.94170 5.05714 5.09886 5.14167 5.18581 5.29412 5.42872 5.52047 5.88971 6.12677 6.52079 6.73583 7.35747 7.95458 8.31801 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048504 B = 0.012438 C = 0.010226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 577.139175 B = 2250.563218 C = 2737.497940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 C 0.099 3.901 4 N -0.482 5.482 5 C 0.173 3.827 6 C -0.447 4.447 7 H 0.099 0.901 8 C 0.021 3.979 9 N -0.747 5.747 10 Si 0.995 3.005 11 H -0.263 1.263 12 H -0.266 1.266 13 H -0.252 1.252 14 C -0.093 4.093 15 N -0.442 5.442 16 C -0.104 4.104 17 C -0.063 4.063 18 H 0.055 0.945 19 H 0.087 0.913 20 H 0.026 0.974 21 H 0.100 0.900 22 H 0.060 0.940 23 H 0.284 0.716 24 H 0.144 0.856 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.992 -3.104 -1.309 3.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.100 4.100 3 C -0.050 4.050 4 N -0.200 5.200 5 C 0.047 3.953 6 C -0.478 4.478 7 H 0.117 0.883 8 C -0.202 4.202 9 N -0.369 5.369 10 Si 0.814 3.186 11 H -0.187 1.187 12 H -0.190 1.190 13 H -0.175 1.175 14 C -0.261 4.261 15 N -0.155 5.155 16 C -0.244 4.244 17 C -0.121 4.121 18 H 0.074 0.926 19 H 0.106 0.894 20 H 0.046 0.954 21 H 0.118 0.882 22 H 0.078 0.922 23 H 0.094 0.906 24 H 0.161 0.839 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.058 -3.290 -1.179 4.056 hybrid contribution 0.167 0.668 0.728 1.002 sum -1.891 -2.622 -0.451 3.264 Atomic orbital electron populations 1.21539 0.93615 1.02565 1.00768 1.20432 0.96979 0.89811 1.02779 1.22650 0.94133 0.98269 0.89979 1.69362 1.15772 1.08649 1.26234 1.19867 0.90954 0.89951 0.94488 1.20049 1.34342 1.03378 0.90074 0.88315 1.27123 0.92722 0.95720 1.04602 1.70183 1.24865 1.12416 1.29392 0.85012 0.79998 0.78574 0.74980 1.18734 1.19041 1.17538 1.23309 1.12411 1.01260 0.89099 1.67571 1.08143 1.08981 1.30763 1.21828 1.12312 0.93247 0.97019 1.20320 1.01245 0.99146 0.91385 0.92586 0.89447 0.95423 0.88169 0.92172 0.90553 0.83893 0.91729 0.92408 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 9.90 71.98 0.71 -3.47 15 2 C -0.06 -2.32 5.83 29.85 0.17 -2.15 15 3 C 0.10 4.83 6.04 42.73 0.26 5.09 15 4 N -0.48 -27.28 8.00 -176.67 -1.41 -28.70 15 5 C 0.17 9.89 6.54 40.22 0.26 10.16 15 6 C -0.45 -24.15 9.16 23.48 0.22 -23.93 15 7 H 0.10 4.90 7.86 -2.91 -0.02 4.88 15 8 C 0.02 1.07 5.49 85.30 0.47 1.53 15 9 N -0.75 -39.64 11.52 21.84 0.25 -39.39 15 10 Si 1.00 37.07 29.57 68.60 2.03 39.10 15 11 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 12 H -0.27 -9.42 7.11 99.48 0.71 -8.71 15 13 H -0.25 -8.97 7.11 99.48 0.71 -8.27 15 14 C -0.09 -4.97 10.99 85.32 0.94 -4.03 15 15 N -0.44 -22.80 10.40 -181.05 -1.88 -24.68 15 16 C -0.10 -4.91 6.80 42.63 0.29 -4.62 15 17 C -0.06 -2.19 9.77 71.24 0.70 -1.50 15 18 H 0.06 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 20 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.10 3.06 5.93 -2.39 -0.01 3.05 15 22 H 0.06 2.39 8.14 -2.39 -0.02 2.38 15 23 H 0.28 13.48 8.29 -92.71 -0.77 12.71 15 24 H 0.14 6.97 8.06 -2.91 -0.02 6.95 15 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 26 H 0.06 1.93 8.14 -2.38 -0.02 1.91 15 27 H 0.08 2.44 5.93 -2.39 -0.01 2.43 15 Total: -1.00 -65.26 236.23 4.16 -61.10 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 1.16 Total: 15.48 kcal Atomic # 6 Polarization: -26.93 SS G_CDS: 4.01 Total: -22.91 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -3.04 Total: -92.77 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Total: -65.26 4.16 -61.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827436.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.372 kcal (2) G-P(sol) polarization free energy of solvation -65.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds