Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86794 * 120.00392 * 2 1 4 4 H 1.48500 * 109.47355 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47380 * 300.00449 * 3 2 1 6 6 H 1.48500 * 109.47218 * 60.00545 * 3 2 1 7 7 C 1.37881 * 119.99441 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99718 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00417 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47402 * 180.02562 * 9 7 2 11 11 C 1.34560 * 125.98326 * 125.01719 * 10 9 7 12 12 N 1.37202 * 106.83413 * 179.97438 * 11 10 9 13 13 C 1.34811 * 107.21937 * 0.15187 * 12 11 10 14 14 N 1.30906 * 108.61082 * 359.78193 * 13 12 11 15 15 C 1.51574 * 109.94304 * 179.81675 * 13 12 11 16 16 C 1.54531 * 104.23980 * 343.42510 * 15 13 12 17 17 C 1.47012 * 141.59815 * 180.24078 * 12 11 10 18 18 H 0.97008 * 119.99644 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46913 * 60.00246 * 9 7 2 20 20 H 1.09001 * 109.47114 * 300.00390 * 9 7 2 21 21 H 1.08000 * 126.58240 * 359.97399 * 11 10 9 22 22 H 1.08999 * 110.47060 * 224.73835 * 15 13 12 23 23 H 1.08993 * 110.58920 * 102.17025 * 15 13 12 24 24 H 1.08996 * 110.97010 * 267.05460 * 16 15 13 25 25 H 1.09002 * 110.96932 * 143.29008 * 16 15 13 26 26 H 1.08994 * 110.23545 * 77.97329 * 17 12 11 27 27 H 1.08998 * 110.22977 * 316.00219 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2301 -3.6447 -0.0005 11 6 2.2688 -4.6517 0.8912 12 7 3.3070 -5.4694 0.5223 13 6 3.8671 -4.9309 -0.5794 14 7 3.2147 -3.8388 -0.8885 15 6 5.0299 -5.7874 -1.0395 16 6 5.3516 -6.6789 0.1810 17 6 3.9947 -6.7073 0.9169 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 -0.8904 20 1 0.6245 -2.5571 0.8896 21 1 1.6094 -4.7897 1.7353 22 1 5.8868 -5.1629 -1.2921 23 1 4.7405 -6.3998 -1.8934 24 1 6.1231 -6.2251 0.8030 25 1 5.6455 -7.6802 -0.1340 26 1 3.4151 -7.5763 0.6055 27 1 4.1510 -6.7243 1.9954 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259841304.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = 39.162502 kcal Electronic energy + Delta-G solvation = -11432.181146 eV Core-core repulsion = 9383.038488 eV Total energy + Delta-G solvation = -2049.142658 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.19482 -37.43065 -35.13351 -32.62617 -31.73611 -28.22898 -27.97541 -25.10979 -22.32723 -21.07118 -20.71172 -18.41317 -17.61862 -16.89990 -16.50371 -15.13513 -15.03369 -14.45221 -14.26193 -14.05022 -13.70744 -13.40441 -13.09981 -12.68752 -12.56726 -12.41172 -11.92504 -11.74366 -11.43806 -10.68420 -10.51551 -10.27867 -9.02051 -8.17075 -6.27082 1.20243 1.37688 1.39817 1.53778 2.01864 2.28518 2.47556 3.07762 3.14892 3.61029 3.89810 4.02106 4.29601 4.48049 4.62801 4.73495 4.79124 4.90450 5.04782 5.18493 5.28207 5.46527 5.50759 5.76402 6.02467 6.26632 6.42380 6.81958 7.38675 7.44293 8.93574 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.068946 B = 0.008611 C = 0.008076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.018636 B = 3250.702498 C = 3466.380334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.517 4.517 8 H 0.042 0.958 9 C 0.101 3.899 10 C 0.011 3.989 11 C -0.060 4.060 12 N -0.488 5.488 13 C 0.159 3.841 14 N -0.530 5.530 15 C -0.038 4.038 16 C -0.111 4.111 17 C 0.093 3.907 18 H 0.266 0.734 19 H -0.004 1.004 20 H 0.019 0.981 21 H 0.186 0.814 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.092 0.908 25 H 0.141 0.859 26 H 0.105 0.895 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.036 -15.785 2.472 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.555 4.555 8 H 0.061 0.939 9 C 0.064 3.936 10 C -0.117 4.117 11 C -0.190 4.190 12 N -0.173 5.173 13 C -0.105 4.105 14 N -0.251 5.251 15 C -0.077 4.077 16 C -0.149 4.149 17 C -0.026 4.026 18 H 0.074 0.926 19 H 0.014 0.986 20 H 0.037 0.963 21 H 0.203 0.797 22 H 0.117 0.883 23 H 0.129 0.871 24 H 0.110 0.890 25 H 0.159 0.841 26 H 0.124 0.876 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.994 -15.331 2.034 18.975 hybrid contribution -0.509 0.776 0.624 1.118 sum 10.485 -14.555 2.658 18.135 Atomic orbital electron populations 1.70080 1.07465 1.27782 1.52007 1.25920 0.95889 1.03014 0.94808 0.85343 0.78516 0.78630 0.78175 1.19712 1.19982 1.19497 1.21314 0.92672 0.91581 1.49927 0.93926 1.17332 0.91372 0.89548 0.95386 1.21257 0.98207 0.97965 0.94303 1.22229 0.97385 0.94424 1.04985 1.46666 1.24513 1.21643 1.24521 1.25443 1.00672 0.93586 0.90782 1.69671 1.09048 1.16640 1.29769 1.20896 0.91648 0.95080 1.00044 1.22809 0.94689 1.02829 0.94533 1.22791 0.94034 0.83270 1.02544 0.92564 0.98586 0.96293 0.79724 0.88290 0.87128 0.88978 0.84053 0.87641 0.87987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.45 13.29 21.45 0.28 -59.17 15 2 C 0.00 0.05 5.46 84.66 0.46 0.51 15 3 Si 0.97 47.91 29.54 68.60 2.03 49.94 15 4 H -0.27 -13.32 7.11 99.48 0.71 -12.61 15 5 H -0.27 -13.06 7.11 99.48 0.71 -12.35 15 6 H -0.27 -12.58 7.11 99.48 0.71 -11.88 15 7 C -0.52 -33.07 9.08 25.60 0.23 -32.84 15 8 H 0.04 2.79 7.74 -2.91 -0.02 2.77 15 9 C 0.10 6.14 5.54 29.10 0.16 6.30 15 10 C 0.01 0.58 6.29 41.38 0.26 0.84 15 11 C -0.06 -2.50 11.92 83.01 0.99 -1.51 15 12 N -0.49 -16.39 3.61 -509.13 -1.84 -18.23 15 13 C 0.16 6.01 8.58 138.36 1.19 7.19 15 14 N -0.53 -27.13 11.24 -175.48 -1.97 -29.10 15 15 C -0.04 -0.81 6.86 30.65 0.21 -0.60 15 16 C -0.11 -1.38 7.17 31.59 0.23 -1.16 15 17 C 0.09 1.68 7.78 86.75 0.67 2.35 15 18 H 0.27 15.68 8.31 -92.70 -0.77 14.91 15 19 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 15 20 H 0.02 1.14 8.11 -2.39 -0.02 1.12 15 21 H 0.19 6.63 8.06 -2.91 -0.02 6.61 15 22 H 0.10 2.02 8.14 -2.39 -0.02 2.00 15 23 H 0.11 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.09 1.06 8.14 -2.39 -0.02 1.04 15 25 H 0.14 0.58 8.14 -2.39 -0.02 0.56 15 26 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 27 H 0.10 1.50 8.14 -2.39 -0.02 1.48 15 Total: -1.00 -82.79 236.86 4.06 -78.74 By element: Atomic # 1 Polarization: -4.42 SS G_CDS: 1.15 Total: -3.27 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.40 Total: -18.91 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -3.52 Total: -106.49 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -82.79 4.06 -78.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259841304.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.899 kcal (2) G-P(sol) polarization free energy of solvation -82.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds