Wall clock time and date at job start Mon Mar 30 2020 02:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40089 * 126.03714 * 2 1 4 4 C 1.30835 * 108.20463 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20158 * 0.02562 * 4 3 2 6 6 C 1.34945 * 126.03798 * 179.97438 * 2 1 3 7 7 C 1.50707 * 126.12528 * 0.03899 * 6 2 1 8 8 C 1.50705 * 115.54972 * 103.33418 * 7 6 2 9 9 H 1.07997 * 119.99730 * 144.60105 * 8 7 6 10 10 C 1.37878 * 119.99573 * 324.59981 * 8 7 6 11 11 N 1.31504 * 120.00392 * 351.72546 * 10 8 7 12 12 Si 1.86805 * 119.99467 * 171.72485 * 10 8 7 13 13 H 1.48501 * 109.47133 * 60.00020 * 12 10 8 14 14 H 1.48497 * 109.47039 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47345 * 300.00091 * 12 10 8 16 16 C 1.52995 * 117.49675 * 317.66122 * 7 6 2 17 17 C 1.52998 * 117.49416 * 249.00147 * 7 6 2 18 18 H 1.08999 * 109.47654 * 84.52135 * 1 2 3 19 19 H 1.09001 * 109.47461 * 204.52169 * 1 2 3 20 20 H 1.09001 * 109.47253 * 324.52335 * 1 2 3 21 21 H 1.07995 * 125.90141 * 180.02562 * 4 3 2 22 22 H 1.08003 * 126.03546 * 179.74252 * 5 4 3 23 23 H 0.97000 * 120.00130 * 180.02562 * 11 10 8 24 24 H 1.08999 * 117.50134 * 0.02562 * 16 7 6 25 25 H 1.09001 * 117.49824 * 145.02530 * 16 7 6 26 26 H 1.09000 * 117.49523 * 214.97785 * 17 7 6 27 27 H 1.08998 * 117.50436 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5436 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0003 8 6 1.8974 -3.2407 -1.3226 9 1 2.1520 -4.2898 -1.3515 10 6 1.6639 -2.5552 -2.4959 11 7 1.1970 -1.3264 -2.4579 12 14 2.0110 -3.3721 -4.1397 13 1 1.1815 -4.5970 -4.2686 14 1 1.6785 -2.4317 -5.2398 15 1 3.4483 -3.7372 -4.2173 16 6 0.6254 -2.8909 0.9137 17 6 2.0432 -3.3471 1.2675 18 1 -0.3634 0.0981 -1.0229 19 1 -0.3634 -0.9350 0.4265 20 1 -0.3634 0.8369 0.5964 21 1 4.4053 1.3710 0.0011 22 1 4.4210 -1.2963 -0.0033 23 1 1.0324 -0.8444 -3.2834 24 1 0.1881 -2.0935 1.5145 25 1 -0.0729 -3.6485 0.5580 26 1 2.2769 -4.4046 1.1444 27 1 2.5391 -2.8500 2.1012 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:22 Heat of formation + Delta-G solvation = 104.450333 kcal Electronic energy + Delta-G solvation = -12177.633636 eV Core-core repulsion = 10131.322071 eV Total energy + Delta-G solvation = -2046.311565 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.97551 -36.17807 -32.24058 -31.86666 -28.63669 -25.80853 -25.45642 -21.54446 -21.24012 -19.68531 -18.53489 -16.72403 -14.96820 -14.74904 -14.15670 -13.68925 -13.19689 -12.90478 -12.43024 -11.69441 -11.54056 -11.37379 -11.01299 -10.95278 -10.47879 -10.41563 -9.87963 -9.54222 -9.36485 -8.92074 -8.37478 -7.89511 -7.18604 -6.16105 -4.21087 3.21479 3.28110 3.30933 3.33357 3.82051 4.08548 4.31839 4.87812 5.40640 5.64623 5.76917 6.09506 6.12146 6.25179 6.41228 6.53276 6.61718 6.70258 6.79576 6.84705 7.13632 7.15067 7.53062 7.70727 7.89009 8.18323 8.38290 8.75853 9.00656 9.39266 10.86784 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.017679 C = 0.015119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.179682 B = 1583.397304 C = 1851.523549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.338 5.338 3 N -0.336 5.336 4 C 0.030 3.970 5 C -0.309 4.309 6 C 0.216 3.784 7 C 0.098 3.902 8 C -0.493 4.493 9 H 0.068 0.932 10 C 0.075 3.925 11 N -0.866 5.866 12 Si 0.899 3.101 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.213 4.213 17 C -0.191 4.191 18 H 0.077 0.923 19 H 0.087 0.913 20 H 0.054 0.946 21 H 0.162 0.838 22 H 0.128 0.872 23 H 0.264 0.736 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 -0.069 3.615 3.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.117 5.117 3 N -0.159 5.159 4 C -0.154 4.154 5 C -0.338 4.338 6 C 0.085 3.915 7 C 0.096 3.904 8 C -0.530 4.530 9 H 0.086 0.914 10 C -0.131 4.131 11 N -0.500 5.500 12 Si 0.726 3.274 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.251 4.251 17 C -0.229 4.229 18 H 0.096 0.904 19 H 0.105 0.895 20 H 0.073 0.927 21 H 0.179 0.821 22 H 0.145 0.855 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.244 1.155 3.473 3.866 hybrid contribution 0.714 -1.028 -1.083 1.655 sum -0.531 0.128 2.390 2.452 Atomic orbital electron populations 1.21723 0.75925 1.01940 1.03212 1.47870 1.05661 1.02924 1.55224 1.77012 1.01631 1.09428 1.27844 1.23347 0.94840 0.95050 1.02186 1.20777 0.96440 0.94019 1.22607 1.20122 0.89784 0.88826 0.92726 1.17321 0.96060 0.86345 0.90716 1.20382 1.48803 0.95858 0.87933 0.91400 1.24988 0.93808 0.94885 0.99404 1.69879 1.41431 1.10682 1.28016 0.86538 0.79099 0.79050 0.82672 1.20156 1.21279 1.19949 1.23246 0.91745 1.03278 1.06806 1.22912 0.99643 0.99973 1.00370 0.90402 0.89484 0.92694 0.82054 0.85453 0.92595 0.91311 0.89646 0.89762 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 10.62 59.84 0.64 3.01 15 2 N -0.34 -8.09 3.46 -63.89 -0.22 -8.31 15 3 N -0.34 -8.04 12.58 30.62 0.39 -7.65 15 4 C 0.03 0.66 12.03 -17.36 -0.21 0.46 15 5 C -0.31 -7.34 10.72 -40.01 -0.43 -7.77 15 6 C 0.22 5.33 4.19 -82.26 -0.34 4.99 15 7 C 0.10 2.37 2.07 -156.81 -0.32 2.05 15 8 C -0.49 -12.96 9.05 -34.44 -0.31 -13.28 15 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 15 10 C 0.07 1.97 5.28 -17.82 -0.09 1.88 15 11 N -0.87 -23.50 9.97 55.43 0.55 -22.94 15 12 Si 0.90 20.71 29.55 -169.99 -5.02 15.69 15 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 14 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 16 C -0.21 -4.52 8.48 -26.70 -0.23 -4.75 15 17 C -0.19 -3.99 9.94 -26.69 -0.27 -4.25 15 18 H 0.08 1.70 7.52 -51.93 -0.39 1.31 15 19 H 0.09 1.73 4.52 -51.93 -0.23 1.50 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.16 2.89 8.06 -52.49 -0.42 2.47 15 22 H 0.13 2.84 8.06 -52.48 -0.42 2.42 15 23 H 0.26 7.08 8.31 -40.82 -0.34 6.74 15 24 H 0.07 1.37 6.40 -51.93 -0.33 1.04 15 25 H 0.09 1.78 8.14 -51.93 -0.42 1.36 15 26 H 0.08 1.67 8.14 -51.93 -0.42 1.24 15 27 H 0.07 1.45 8.14 -51.93 -0.42 1.02 15 LS Contribution 232.50 15.07 3.50 3.50 Total: -1.00 -29.00 232.50 -5.41 -34.41 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.04 Total: 2.98 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.57 Total: -17.68 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.72 Total: -38.91 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.00 -5.41 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.865 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds