Wall clock time and date at job start Mon Mar 30 2020 02:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40089 * 126.03714 * 2 1 4 4 C 1.30835 * 108.20463 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20158 * 0.02562 * 4 3 2 6 6 C 1.34945 * 126.03798 * 179.97438 * 2 1 3 7 7 C 1.50707 * 126.12528 * 0.03899 * 6 2 1 8 8 C 1.50705 * 115.54972 * 103.33418 * 7 6 2 9 9 H 1.07997 * 119.99730 * 144.60105 * 8 7 6 10 10 C 1.37878 * 119.99573 * 324.59981 * 8 7 6 11 11 N 1.31504 * 120.00392 * 351.72546 * 10 8 7 12 12 Si 1.86805 * 119.99467 * 171.72485 * 10 8 7 13 13 H 1.48501 * 109.47133 * 60.00020 * 12 10 8 14 14 H 1.48497 * 109.47039 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47345 * 300.00091 * 12 10 8 16 16 C 1.52995 * 117.49675 * 317.66122 * 7 6 2 17 17 C 1.52998 * 117.49416 * 249.00147 * 7 6 2 18 18 H 1.08999 * 109.47654 * 84.52135 * 1 2 3 19 19 H 1.09001 * 109.47461 * 204.52169 * 1 2 3 20 20 H 1.09001 * 109.47253 * 324.52335 * 1 2 3 21 21 H 1.07995 * 125.90141 * 180.02562 * 4 3 2 22 22 H 1.08003 * 126.03546 * 179.74252 * 5 4 3 23 23 H 0.97000 * 120.00130 * 180.02562 * 11 10 8 24 24 H 1.08999 * 117.50134 * 0.02562 * 16 7 6 25 25 H 1.09001 * 117.49824 * 145.02530 * 16 7 6 26 26 H 1.09000 * 117.49523 * 214.97785 * 17 7 6 27 27 H 1.08998 * 117.50436 * 359.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5436 -0.6666 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0003 8 6 1.8974 -3.2407 -1.3226 9 1 2.1520 -4.2898 -1.3515 10 6 1.6639 -2.5552 -2.4959 11 7 1.1970 -1.3264 -2.4579 12 14 2.0110 -3.3721 -4.1397 13 1 1.1815 -4.5970 -4.2686 14 1 1.6785 -2.4317 -5.2398 15 1 3.4483 -3.7372 -4.2173 16 6 0.6254 -2.8909 0.9137 17 6 2.0432 -3.3471 1.2675 18 1 -0.3634 0.0981 -1.0229 19 1 -0.3634 -0.9350 0.4265 20 1 -0.3634 0.8369 0.5964 21 1 4.4053 1.3710 0.0011 22 1 4.4210 -1.2963 -0.0033 23 1 1.0324 -0.8444 -3.2834 24 1 0.1881 -2.0935 1.5145 25 1 -0.0729 -3.6485 0.5580 26 1 2.2769 -4.4046 1.1444 27 1 2.5391 -2.8500 2.1012 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:17 Heat of formation + Delta-G solvation = 87.721980 kcal Electronic energy + Delta-G solvation = -12178.359032 eV Core-core repulsion = 10131.322071 eV Total energy + Delta-G solvation = -2047.036961 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.73945 -37.93729 -34.19443 -33.58562 -30.41891 -27.70375 -27.21556 -23.24570 -23.02902 -21.41581 -20.36763 -18.58381 -16.74835 -16.67151 -15.91540 -15.43111 -14.90862 -14.64094 -14.15958 -13.51006 -13.29111 -13.09486 -12.84606 -12.74299 -12.32535 -12.07245 -11.72123 -11.34554 -11.19506 -10.71353 -10.24702 -9.68209 -9.00023 -8.12191 -6.21851 1.39383 1.44930 1.48553 1.50841 2.11858 2.30256 2.42650 3.00672 3.58460 3.99974 4.07093 4.44397 4.48464 4.59969 4.72988 4.87019 4.90971 5.01857 5.08590 5.13408 5.36149 5.49481 5.67581 5.75411 6.17253 6.26502 6.58363 6.79885 7.23035 7.39465 8.86996 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.033518 B = 0.017679 C = 0.015119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.179682 B = 1583.397304 C = 1851.523549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.347 5.347 3 N -0.357 5.357 4 C 0.034 3.966 5 C -0.330 4.330 6 C 0.201 3.799 7 C 0.060 3.940 8 C -0.508 4.508 9 H 0.065 0.935 10 C 0.032 3.968 11 N -0.884 5.884 12 Si 0.953 3.047 13 H -0.268 1.268 14 H -0.292 1.292 15 H -0.275 1.275 16 C -0.199 4.199 17 C -0.172 4.172 18 H 0.061 0.939 19 H 0.093 0.907 20 H 0.081 0.919 21 H 0.201 0.799 22 H 0.134 0.866 23 H 0.257 0.743 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -0.318 4.087 4.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.126 5.126 3 N -0.180 5.180 4 C -0.150 4.150 5 C -0.360 4.360 6 C 0.070 3.930 7 C 0.058 3.942 8 C -0.545 4.545 9 H 0.083 0.917 10 C -0.170 4.170 11 N -0.519 5.519 12 Si 0.780 3.220 13 H -0.193 1.193 14 H -0.217 1.217 15 H -0.200 1.200 16 C -0.237 4.237 17 C -0.210 4.210 18 H 0.080 0.920 19 H 0.111 0.889 20 H 0.100 0.900 21 H 0.217 0.783 22 H 0.152 0.848 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.035 0.893 3.957 4.186 hybrid contribution 0.662 -0.966 -1.187 1.668 sum -0.374 -0.073 2.769 2.795 Atomic orbital electron populations 1.21815 0.74828 1.03425 1.02778 1.48101 1.06507 1.02771 1.55268 1.76966 1.02402 1.09927 1.28672 1.23946 0.95505 0.95019 1.00486 1.21084 0.96619 0.95067 1.23203 1.20327 0.90399 0.89271 0.92974 1.17430 0.98940 0.86697 0.91126 1.20657 1.48593 0.95965 0.89320 0.91730 1.25605 0.93936 0.95466 1.02037 1.70010 1.42519 1.11551 1.27857 0.85681 0.78766 0.78297 0.79294 1.19330 1.21748 1.20014 1.23202 0.91694 1.03340 1.05446 1.22960 0.99139 1.00137 0.98789 0.92041 0.88900 0.90012 0.78264 0.84835 0.93423 0.90000 0.89543 0.88764 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.59 10.62 127.77 1.36 5.95 15 2 N -0.35 -16.31 3.46 -356.04 -1.23 -17.54 15 3 N -0.36 -16.60 12.58 -57.02 -0.72 -17.32 15 4 C 0.03 1.47 12.03 85.24 1.03 2.49 15 5 C -0.33 -15.33 10.72 21.99 0.24 -15.09 15 6 C 0.20 9.74 4.19 41.41 0.17 9.91 15 7 C 0.06 2.85 2.07 -53.67 -0.11 2.74 15 8 C -0.51 -26.41 9.05 25.60 0.23 -26.18 15 9 H 0.06 3.29 7.83 -2.91 -0.02 3.27 15 10 C 0.03 1.69 5.28 84.66 0.45 2.14 15 11 N -0.88 -48.01 9.97 21.45 0.21 -47.80 15 12 Si 0.95 42.36 29.55 68.60 2.03 44.38 15 13 H -0.27 -11.46 7.11 99.48 0.71 -10.76 15 14 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 15 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 16 C -0.20 -8.10 8.48 30.62 0.26 -7.84 15 17 C -0.17 -6.84 9.94 30.62 0.30 -6.53 15 18 H 0.06 2.68 7.52 -2.39 -0.02 2.67 15 19 H 0.09 3.59 4.52 -2.39 -0.01 3.58 15 20 H 0.08 2.80 8.14 -2.39 -0.02 2.78 15 21 H 0.20 6.60 8.06 -2.91 -0.02 6.57 15 22 H 0.13 5.84 8.06 -2.91 -0.02 5.82 15 23 H 0.26 13.86 8.31 -92.71 -0.77 13.09 15 24 H 0.08 3.09 6.40 -2.39 -0.02 3.07 15 25 H 0.09 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.09 3.51 8.14 -2.39 -0.02 3.50 15 27 H 0.09 3.18 8.14 -2.39 -0.02 3.16 15 Total: -1.00 -59.62 232.50 5.37 -54.25 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: 1.16 Total: 16.45 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.92 Total: -32.42 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.74 Total: -82.66 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Total: -59.62 5.37 -54.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.971 kcal (2) G-P(sol) polarization free energy of solvation -59.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds