Wall clock time and date at job start Mon Mar 30 2020 01:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.34119 * 126.02520 * 2 1 4 4 C 1.30448 * 109.25003 * 179.97438 * 3 2 1 5 5 N 1.35331 * 108.72821 * 359.91171 * 4 3 2 6 6 C 1.34665 * 126.02189 * 180.02562 * 2 1 3 7 7 C 1.51241 * 143.09865 * 0.12414 * 6 2 1 8 8 H 1.09004 * 110.57111 * 282.19821 * 7 6 2 9 9 C 1.50698 * 110.46629 * 44.73072 * 7 6 2 10 10 H 1.08005 * 119.99819 * 356.33418 * 9 7 6 11 11 C 1.37875 * 120.00046 * 176.32759 * 9 7 6 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.54543 * 104.29700 * 163.43755 * 7 6 2 18 18 C 1.46973 * 142.23379 * 180.27473 * 5 4 3 19 19 H 1.08996 * 109.47045 * 89.97038 * 1 2 3 20 20 H 1.08997 * 109.47121 * 209.97879 * 1 2 3 21 21 H 1.09000 * 109.46977 * 329.97281 * 1 2 3 22 22 H 1.08004 * 125.63444 * 179.91378 * 4 3 2 23 23 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 24 24 H 1.09006 * 110.91672 * 143.52112 * 17 7 6 25 25 H 1.08997 * 110.92405 * 267.15213 * 17 7 6 26 26 H 1.09005 * 110.20923 * 78.00852 * 18 5 4 27 27 H 1.09002 * 110.27062 * 316.15028 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2959 1.0847 0.0000 4 6 3.5449 0.7082 0.0006 5 7 3.5910 -0.6443 0.0029 6 6 2.2990 -1.0892 -0.0005 7 6 2.2758 -2.6014 -0.0031 8 1 2.0526 -2.9828 0.9933 9 6 1.2666 -3.1112 -0.9994 10 1 0.6448 -2.4149 -1.5426 11 6 1.1371 -4.4664 -1.2176 12 7 1.8940 -5.3142 -0.5560 13 14 -0.1134 -5.0982 -2.4531 14 1 -0.0559 -6.5813 -2.5013 15 1 0.1958 -4.5464 -3.7967 16 1 -1.4747 -4.6691 -2.0432 17 6 3.7060 -3.0043 -0.4282 18 6 4.5302 -1.7748 0.0091 19 1 -0.3633 0.0005 -1.0276 20 1 -0.3633 -0.8901 0.5135 21 1 -0.3633 0.8897 0.5143 22 1 4.4007 1.3670 -0.0006 23 1 2.5436 -4.9861 0.0853 24 1 4.0316 -3.8998 0.1012 25 1 3.7654 -3.1485 -1.5070 26 1 4.9296 -1.9271 1.0119 27 1 5.3420 -1.5952 -0.6957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259854232.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:00 Heat of formation + Delta-G solvation = 37.371520 kcal Electronic energy + Delta-G solvation = -11961.619819 eV Core-core repulsion = 9912.399498 eV Total energy + Delta-G solvation = -2049.220320 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.29040 -37.80008 -35.10477 -32.85191 -30.34753 -29.57595 -26.97983 -25.22457 -22.71178 -21.50241 -20.72893 -18.77077 -17.64864 -16.73457 -15.67254 -15.30418 -15.18431 -14.63707 -14.11918 -13.70598 -13.51478 -13.46396 -13.17704 -12.87452 -12.60092 -12.33112 -12.03619 -11.91089 -10.91396 -10.83064 -10.51338 -10.22822 -9.03402 -8.55740 -6.32016 1.22851 1.56751 1.62351 1.82259 2.00073 2.15002 2.58062 3.18862 3.52817 3.74427 3.96544 4.02110 4.23870 4.30612 4.47191 4.68045 4.78145 4.87056 5.00897 5.09352 5.23797 5.35979 5.46438 5.86099 6.02203 6.20941 6.50322 6.66622 7.15196 7.43879 8.80636 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043406 B = 0.013937 C = 0.011195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.912576 B = 2008.609846 C = 2500.572934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C -0.033 4.033 3 N -0.518 5.518 4 C 0.189 3.811 5 N -0.488 5.488 6 C -0.018 4.018 7 C 0.086 3.914 8 H 0.014 0.986 9 C -0.594 4.594 10 H 0.042 0.958 11 C -0.020 4.020 12 N -0.932 5.932 13 Si 1.109 2.891 14 H -0.282 1.282 15 H -0.276 1.276 16 H -0.273 1.273 17 C -0.116 4.116 18 C 0.111 3.889 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.073 0.927 22 H 0.244 0.756 23 H 0.265 0.735 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 5.958 0.440 7.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.159 4.159 3 N -0.238 5.238 4 C -0.091 4.091 5 N -0.173 5.173 6 C -0.134 4.134 7 C 0.066 3.934 8 H 0.032 0.968 9 C -0.633 4.633 10 H 0.061 0.939 11 C -0.219 4.219 12 N -0.570 5.570 13 Si 0.932 3.068 14 H -0.208 1.208 15 H -0.202 1.202 16 H -0.199 1.199 17 C -0.155 4.155 18 C -0.009 4.009 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.260 0.740 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.792 5.432 -0.224 6.629 hybrid contribution 0.953 0.499 0.795 1.338 sum 4.745 5.931 0.571 7.617 Atomic orbital electron populations 1.19851 0.87367 1.01826 1.01666 1.20231 0.97149 0.87464 1.11100 1.70145 1.01179 1.29975 1.22472 1.25270 0.97357 0.80458 1.06014 1.47016 1.09000 1.07204 1.54097 1.22816 0.85987 0.96895 1.07701 1.17969 0.94620 0.84790 0.95974 0.96839 1.22032 1.21940 0.94325 1.24975 0.93932 1.27012 1.00713 0.93618 1.00598 1.70932 1.22716 1.37735 1.25619 0.83009 0.74132 0.75662 0.74044 1.20754 1.20204 1.19871 1.22751 0.95326 0.96323 1.01068 1.22525 0.91575 0.82760 1.04076 0.92194 0.92262 0.90790 0.74041 0.92404 0.90117 0.92465 0.88010 0.87062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.95 10.42 71.24 0.74 -1.21 15 2 C -0.03 -1.48 7.10 41.39 0.29 -1.19 15 3 N -0.52 -21.36 11.25 -188.13 -2.12 -23.48 15 4 C 0.19 6.53 13.05 180.19 2.35 8.88 15 5 N -0.49 -18.50 3.61 -510.30 -1.84 -20.34 15 6 C -0.02 -0.82 6.69 41.16 0.28 -0.55 15 7 C 0.09 4.27 2.50 -11.59 -0.03 4.24 15 8 H 0.01 0.74 8.06 -2.38 -0.02 0.72 15 9 C -0.59 -32.64 8.48 25.60 0.22 -32.42 15 10 H 0.04 2.40 7.77 -2.91 -0.02 2.38 15 11 C -0.02 -1.10 5.33 84.65 0.45 -0.65 15 12 N -0.93 -53.14 13.42 21.45 0.29 -52.85 15 13 Si 1.11 49.00 29.90 68.60 2.05 51.05 15 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 15 H -0.28 -11.61 7.11 99.48 0.71 -10.90 15 16 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 17 C -0.12 -4.84 5.56 31.57 0.18 -4.66 15 18 C 0.11 3.53 7.77 86.74 0.67 4.21 15 19 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 20 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 22 H 0.24 5.53 8.06 -2.91 -0.02 5.51 15 23 H 0.26 14.76 5.46 -92.71 -0.51 14.25 15 24 H 0.08 3.30 6.85 -2.38 -0.02 3.28 15 25 H 0.06 2.58 7.91 -2.39 -0.02 2.56 15 26 H 0.10 2.73 8.14 -2.38 -0.02 2.71 15 27 H 0.11 2.79 8.14 -2.39 -0.02 2.77 15 Total: -1.00 -65.80 231.19 4.95 -60.85 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.42 Total: 8.12 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.15 Total: -23.35 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -3.67 Total: -96.68 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.05 Total: 51.05 kcal Total: -65.80 4.95 -60.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259854232.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.222 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds