Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46953 * 2 1 4 4 N 1.32459 * 120.37778 * 269.97722 * 3 2 1 5 5 C 1.32019 * 121.29405 * 180.02562 * 4 3 2 6 6 N 1.31399 * 122.04381 * 359.70311 * 5 4 3 7 7 C 1.34037 * 120.57928 * 0.58653 * 6 5 4 8 8 C 1.41549 * 120.66342 * 179.70743 * 7 6 5 9 9 H 1.08007 * 119.99618 * 186.63053 * 8 7 6 10 10 C 1.40108 * 120.00059 * 6.63404 * 8 7 6 11 11 N 1.30668 * 120.00001 * 7.04109 * 10 8 7 12 12 Si 1.86802 * 120.00132 * 187.04062 * 10 8 7 13 13 H 1.48504 * 109.47119 * 265.02091 * 12 10 8 14 14 H 1.48500 * 109.47019 * 25.01695 * 12 10 8 15 15 H 1.48493 * 109.47060 * 145.01718 * 12 10 8 16 16 C 1.38292 * 120.37035 * 90.00358 * 3 2 1 17 17 C 1.50693 * 120.92218 * 359.94880 * 16 3 2 18 18 H 1.08999 * 109.46776 * 300.00228 * 1 2 3 19 19 H 1.09001 * 109.46776 * 59.99405 * 1 2 3 20 20 H 1.08994 * 109.47257 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46844 * 240.00321 * 2 1 3 22 22 H 1.08999 * 109.47054 * 119.99878 * 2 1 3 23 23 H 1.08002 * 118.97671 * 179.97438 * 5 4 3 24 24 H 0.96999 * 120.00204 * 179.97438 * 11 10 8 25 25 H 1.08996 * 109.47817 * 270.02253 * 17 16 3 26 26 H 1.09002 * 109.47418 * 30.02618 * 17 16 3 27 27 H 1.09003 * 109.46648 * 150.02494 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2561 2.0522 -1.1427 5 6 2.6965 3.2966 -1.1638 6 7 2.9294 3.9725 -0.0614 7 6 2.7353 3.4077 1.1386 8 6 2.9915 4.1321 2.3274 9 1 2.9350 3.6358 3.2850 10 6 3.3183 5.4930 2.2618 11 7 3.2526 6.1264 1.1208 12 14 3.8477 6.4019 3.8055 13 1 2.6714 7.0767 4.4107 14 1 4.4183 5.4353 4.7779 15 1 4.8743 7.4161 3.4553 16 6 2.2655 2.0800 1.1931 17 6 2.0232 1.3979 2.5148 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.8666 3.7753 -2.1169 24 1 3.4785 7.0687 1.0755 25 1 0.9961 1.5763 2.8330 26 1 2.1890 0.3261 2.4064 27 1 2.7095 1.7980 3.2613 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 20.394137 kcal Electronic energy + Delta-G solvation = -11717.859494 eV Core-core repulsion = 9667.902979 eV Total energy + Delta-G solvation = -2049.956515 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.06555 -34.42658 -33.64931 -31.72136 -29.99058 -27.01968 -25.70495 -23.40102 -20.93269 -20.45926 -17.51282 -16.03928 -15.15919 -14.50641 -13.62287 -13.36066 -12.88914 -12.81917 -12.52721 -11.88851 -11.70637 -11.62661 -11.40625 -11.25085 -10.69599 -10.64210 -10.29075 -10.15847 -9.62982 -8.88973 -8.48382 -7.71584 -7.35616 -6.50826 -4.72200 2.68761 2.84825 3.03763 3.07276 3.23030 3.86883 4.72882 5.37463 5.59596 5.72681 5.87804 6.01006 6.03255 6.22176 6.36304 6.38623 6.50846 6.58078 6.71309 6.72562 6.81433 7.06413 7.27107 7.45998 7.90756 8.06015 8.52415 8.78975 9.10305 10.12538 10.25627 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054410 B = 0.011886 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.487013 B = 2355.162656 C = 2755.397856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.068 4.068 3 C 0.160 3.840 4 N -0.624 5.624 5 C 0.281 3.719 6 N -0.523 5.523 7 C 0.275 3.725 8 C -0.424 4.424 9 H 0.091 0.909 10 C 0.071 3.929 11 N -0.712 5.712 12 Si 0.909 3.091 13 H -0.269 1.269 14 H -0.259 1.259 15 H -0.274 1.274 16 C -0.290 4.290 17 C -0.074 4.074 18 H 0.052 0.948 19 H 0.053 0.947 20 H 0.049 0.951 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.155 0.845 24 H 0.276 0.724 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.644 -4.277 2.563 5.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 C 0.021 3.979 4 N -0.347 5.347 5 C -0.010 4.010 6 N -0.242 5.242 7 C 0.146 3.854 8 C -0.458 4.458 9 H 0.108 0.892 10 C -0.155 4.155 11 N -0.333 5.333 12 Si 0.733 3.267 13 H -0.194 1.194 14 H -0.183 1.183 15 H -0.199 1.199 16 C -0.299 4.299 17 C -0.132 4.132 18 H 0.072 0.928 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.088 0.912 23 H 0.172 0.828 24 H 0.088 0.912 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.466 -3.616 1.595 4.215 hybrid contribution 0.120 0.208 1.312 1.334 sum -1.346 -3.409 2.907 4.677 Atomic orbital electron populations 1.21614 0.95305 1.00520 1.02069 1.20326 0.95662 0.92860 1.01726 1.20637 0.93733 0.94657 0.88873 1.67926 1.24790 1.12427 1.29560 1.24325 0.92201 0.87262 0.97260 1.69259 1.21670 1.35879 0.97439 1.18641 0.87030 0.87894 0.91791 1.19693 1.39421 0.93615 0.93044 0.89153 1.26123 0.93879 0.98212 0.97331 1.70032 1.28209 1.09650 1.25430 0.86288 0.79196 0.79564 0.81685 1.19370 1.18305 1.19904 1.21007 1.14984 0.98760 0.95175 1.20279 1.00151 0.97718 0.95074 0.92849 0.92744 0.93173 0.91526 0.91185 0.82763 0.91249 0.93682 0.93807 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 37.16 0.37 -1.86 15 2 C -0.07 -1.24 5.89 -27.88 -0.16 -1.41 15 3 C 0.16 3.76 6.07 -82.30 -0.50 3.26 15 4 N -0.62 -15.60 10.36 -10.88 -0.11 -15.71 15 5 C 0.28 7.24 12.27 -92.30 -1.13 6.11 15 6 N -0.52 -14.78 8.15 -12.52 -0.10 -14.88 15 7 C 0.28 7.60 6.55 -84.62 -0.55 7.05 15 8 C -0.42 -11.20 8.75 -37.62 -0.33 -11.53 15 9 H 0.09 2.20 6.13 -52.48 -0.32 1.88 15 10 C 0.07 1.80 5.48 -17.35 -0.10 1.70 15 11 N -0.71 -18.85 11.62 55.55 0.65 -18.20 15 12 Si 0.91 18.22 29.57 -169.99 -5.03 13.19 15 13 H -0.27 -5.28 7.11 56.52 0.40 -4.88 15 14 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 15 H -0.27 -5.40 7.11 56.52 0.40 -5.00 15 16 C -0.29 -7.14 5.98 -103.58 -0.62 -7.76 15 17 C -0.07 -1.50 9.24 36.00 0.33 -1.17 15 18 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 21 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.07 1.17 6.08 -51.93 -0.32 0.85 15 23 H 0.16 3.50 8.06 -52.49 -0.42 3.08 15 24 H 0.28 6.58 8.29 -40.82 -0.34 6.24 15 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.04 0.77 6.09 -51.93 -0.32 0.45 15 27 H 0.06 1.15 6.39 -51.93 -0.33 0.82 15 LS Contribution 232.88 15.07 3.51 3.51 Total: -1.00 -29.80 232.88 -6.74 -36.54 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -2.96 Total: 1.16 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.69 Total: -5.60 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.43 Total: -48.79 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.80 -6.74 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.929 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds