Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50700 * 109.46953 * 2 1 4 4 N 1.32459 * 120.37778 * 269.97722 * 3 2 1 5 5 C 1.32019 * 121.29405 * 180.02562 * 4 3 2 6 6 N 1.31399 * 122.04381 * 359.70311 * 5 4 3 7 7 C 1.34037 * 120.57928 * 0.58653 * 6 5 4 8 8 C 1.41549 * 120.66342 * 179.70743 * 7 6 5 9 9 H 1.08007 * 119.99618 * 186.63053 * 8 7 6 10 10 C 1.40108 * 120.00059 * 6.63404 * 8 7 6 11 11 N 1.30668 * 120.00001 * 7.04109 * 10 8 7 12 12 Si 1.86802 * 120.00132 * 187.04062 * 10 8 7 13 13 H 1.48504 * 109.47119 * 265.02091 * 12 10 8 14 14 H 1.48500 * 109.47019 * 25.01695 * 12 10 8 15 15 H 1.48493 * 109.47060 * 145.01718 * 12 10 8 16 16 C 1.38292 * 120.37035 * 90.00358 * 3 2 1 17 17 C 1.50693 * 120.92218 * 359.94880 * 16 3 2 18 18 H 1.08999 * 109.46776 * 300.00228 * 1 2 3 19 19 H 1.09001 * 109.46776 * 59.99405 * 1 2 3 20 20 H 1.08994 * 109.47257 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46844 * 240.00321 * 2 1 3 22 22 H 1.08999 * 109.47054 * 119.99878 * 2 1 3 23 23 H 1.08002 * 118.97671 * 179.97438 * 5 4 3 24 24 H 0.96999 * 120.00204 * 179.97438 * 11 10 8 25 25 H 1.08996 * 109.47817 * 270.02253 * 17 16 3 26 26 H 1.09002 * 109.47418 * 30.02618 * 17 16 3 27 27 H 1.09003 * 109.46648 * 150.02494 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2561 2.0522 -1.1427 5 6 2.6965 3.2966 -1.1638 6 7 2.9294 3.9725 -0.0614 7 6 2.7353 3.4077 1.1386 8 6 2.9915 4.1321 2.3274 9 1 2.9350 3.6358 3.2850 10 6 3.3183 5.4930 2.2618 11 7 3.2526 6.1264 1.1208 12 14 3.8477 6.4019 3.8055 13 1 2.6714 7.0767 4.4107 14 1 4.4183 5.4353 4.7779 15 1 4.8743 7.4161 3.4553 16 6 2.2655 2.0800 1.1931 17 6 2.0232 1.3979 2.5148 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 0.0005 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 2.8666 3.7753 -2.1169 24 1 3.4785 7.0687 1.0755 25 1 0.9961 1.5763 2.8330 26 1 2.1890 0.3261 2.4064 27 1 2.7095 1.7980 3.2613 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858417.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = 2.869498 kcal Electronic energy + Delta-G solvation = -11718.619419 eV Core-core repulsion = 9667.902979 eV Total energy + Delta-G solvation = -2050.716440 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.95412 -36.22422 -35.42135 -33.57822 -31.66652 -28.90138 -27.48767 -25.01611 -22.79614 -22.22088 -19.42486 -17.84331 -17.03235 -16.18103 -15.36996 -14.91236 -14.66145 -14.43997 -14.27957 -13.52849 -13.29988 -13.24433 -13.06682 -12.83930 -12.38862 -12.17629 -11.86353 -11.72786 -11.44319 -10.79203 -10.42964 -9.60150 -9.30301 -8.39974 -6.69978 0.79049 1.02992 1.40081 1.54010 1.57625 2.19262 2.83363 3.71664 3.83794 4.05904 4.21728 4.44930 4.56115 4.73056 4.74885 4.84575 4.91495 5.07191 5.09338 5.20450 5.26889 5.37682 5.46953 5.68215 6.02416 6.11693 6.61517 6.82500 7.17600 8.21231 8.36669 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054410 B = 0.011886 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.487013 B = 2355.162656 C = 2755.397856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C 0.147 3.853 4 N -0.631 5.631 5 C 0.264 3.736 6 N -0.558 5.558 7 C 0.236 3.764 8 C -0.451 4.451 9 H 0.103 0.897 10 C 0.024 3.976 11 N -0.754 5.754 12 Si 0.992 3.008 13 H -0.260 1.260 14 H -0.250 1.250 15 H -0.269 1.269 16 C -0.308 4.308 17 C -0.067 4.067 18 H 0.047 0.953 19 H 0.037 0.963 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.173 0.827 24 H 0.284 0.716 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.904 -5.316 4.050 6.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.102 4.102 3 C 0.009 3.991 4 N -0.355 5.355 5 C -0.027 4.027 6 N -0.278 5.278 7 C 0.108 3.892 8 C -0.484 4.484 9 H 0.121 0.879 10 C -0.199 4.199 11 N -0.376 5.376 12 Si 0.811 3.189 13 H -0.184 1.184 14 H -0.174 1.174 15 H -0.194 1.194 16 C -0.316 4.316 17 C -0.125 4.125 18 H 0.067 0.933 19 H 0.056 0.944 20 H 0.107 0.893 21 H 0.091 0.909 22 H 0.111 0.889 23 H 0.190 0.810 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.740 -4.686 3.074 5.868 hybrid contribution 0.176 0.477 0.777 0.928 sum -1.564 -4.209 3.851 5.915 Atomic orbital electron populations 1.21577 0.93523 1.02726 1.01021 1.20449 0.97033 0.89547 1.03151 1.21482 0.92696 0.96822 0.88124 1.68021 1.24856 1.12080 1.30528 1.24738 0.92408 0.87947 0.97641 1.69222 1.23135 1.37153 0.98336 1.19230 0.88097 0.89768 0.92133 1.20130 1.40191 0.94730 0.93335 0.87879 1.27153 0.93183 0.98656 1.00921 1.70129 1.29013 1.10391 1.28044 0.85053 0.78899 0.78011 0.76924 1.18431 1.17361 1.19377 1.21484 1.14366 0.98120 0.97612 1.20279 1.00608 0.98994 0.92622 0.93349 0.94360 0.89313 0.90861 0.88934 0.81026 0.90572 0.92652 0.90888 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.90 71.98 0.71 -3.16 15 2 C -0.06 -2.18 5.89 29.85 0.18 -2.01 15 3 C 0.15 6.80 6.07 42.48 0.26 7.06 15 4 N -0.63 -31.69 10.36 -188.35 -1.95 -33.64 15 5 C 0.26 13.92 12.27 180.93 2.22 16.14 15 6 N -0.56 -32.41 8.15 -193.51 -1.58 -33.99 15 7 C 0.24 13.26 6.55 40.29 0.26 13.52 15 8 C -0.45 -23.96 8.75 23.54 0.21 -23.75 15 9 H 0.10 4.99 6.13 -2.91 -0.02 4.97 15 10 C 0.02 1.21 5.48 85.32 0.47 1.68 15 11 N -0.75 -40.70 11.62 21.85 0.25 -40.44 15 12 Si 0.99 36.98 29.57 68.60 2.03 39.01 15 13 H -0.26 -9.25 7.11 99.48 0.71 -8.54 15 14 H -0.25 -8.87 7.11 99.48 0.71 -8.16 15 15 H -0.27 -9.71 7.11 99.48 0.71 -9.01 15 16 C -0.31 -14.98 5.98 -19.19 -0.11 -15.10 15 17 C -0.07 -2.58 9.24 71.23 0.66 -1.92 15 18 H 0.05 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 20 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.09 2.73 6.08 -2.39 -0.01 2.72 15 23 H 0.17 8.02 8.06 -2.91 -0.02 8.00 15 24 H 0.28 13.74 8.29 -92.71 -0.77 12.97 15 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.07 2.32 6.09 -2.39 -0.01 2.30 15 27 H 0.05 2.10 6.39 -2.39 -0.02 2.09 15 Total: -1.00 -65.07 232.88 4.77 -60.30 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 1.17 Total: 16.30 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 4.85 Total: -7.53 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -3.27 Total: -108.07 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -65.07 4.77 -60.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858417.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.165 kcal (2) G-P(sol) polarization free energy of solvation -65.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds