Wall clock time and date at job start Mon Mar 30 2020 02:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86798 * 119.99520 * 2 1 4 4 H 1.48500 * 109.47406 * 269.99794 * 3 2 1 5 5 H 1.48502 * 109.47247 * 30.00259 * 3 2 1 6 6 H 1.48505 * 109.47170 * 150.00036 * 3 2 1 7 7 C 1.40028 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.41069 * 120.00332 * 0.02562 * 7 2 1 10 10 N 1.33895 * 119.95204 * 0.02562 * 9 7 2 11 11 C 1.31393 * 121.76620 * 180.02562 * 10 9 7 12 12 C 1.38889 * 121.27345 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.41902 * 0.26324 * 12 11 10 14 14 C 1.39602 * 118.61795 * 359.52365 * 13 12 11 15 15 O 1.35912 * 108.65932 * 180.23567 * 14 13 12 16 16 C 1.44043 * 105.53765 * 17.34939 * 15 14 13 17 17 O 1.36041 * 132.67490 * 180.31034 * 13 12 11 18 18 H 0.97001 * 120.00777 * 359.97438 * 1 2 3 19 19 H 1.07996 * 119.37142 * 179.97438 * 11 10 9 20 20 H 1.08002 * 120.28838 * 179.97438 * 12 11 10 21 21 H 1.08997 * 110.56512 * 91.69862 * 16 15 14 22 22 H 1.08996 * 110.56006 * 214.54697 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0465 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5392 1.4403 0.7000 7 6 2.0079 -1.2127 -0.0005 8 1 3.0880 -1.2126 -0.0010 9 6 1.3027 -2.4344 -0.0016 10 7 -0.0363 -2.4334 -0.0027 11 6 -0.7288 -3.5500 -0.0032 12 6 -0.1001 -4.7884 -0.0033 13 6 1.2866 -4.8490 0.0028 14 6 2.0081 -3.6539 -0.0013 15 8 3.3352 -3.9472 0.0006 16 6 3.4264 -5.3255 -0.4079 17 8 2.1642 -5.8885 -0.0010 18 1 -0.4851 0.8400 0.0004 19 1 -1.8078 -3.5041 -0.0036 20 1 -0.6850 -5.6963 -0.0033 21 1 3.5470 -5.3973 -1.4888 22 1 4.2502 -5.8227 0.1041 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259870035.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:21 Heat of formation + Delta-G solvation = -27.036687 kcal Electronic energy + Delta-G solvation = -11697.939580 eV Core-core repulsion = 9412.374554 eV Total energy + Delta-G solvation = -2285.565026 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.91410 -37.26716 -35.17806 -33.59973 -29.94298 -29.43919 -25.87383 -24.85401 -22.04920 -21.47173 -18.07397 -16.67303 -16.58892 -16.18495 -15.15421 -14.79275 -13.51855 -13.33409 -12.95306 -12.66002 -12.25839 -11.88985 -11.61371 -11.28735 -10.86326 -10.62451 -10.43789 -9.93761 -9.41015 -7.95213 -7.82002 -7.20746 -6.56868 -4.58691 2.57587 2.69492 3.05280 3.08972 3.13221 3.87651 3.91101 4.51212 4.62345 5.42665 5.58556 5.67359 5.97162 6.02805 6.24748 6.59327 6.83358 7.05510 7.24688 7.37960 7.54757 8.04971 8.14155 8.56487 8.78148 9.88850 10.17417 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.051398 B = 0.013567 C = 0.010821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.637387 B = 2063.300053 C = 2586.992601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.089 0.911 9 C 0.280 3.720 10 N -0.468 5.468 11 C 0.136 3.864 12 C -0.301 4.301 13 C 0.083 3.917 14 C -0.146 4.146 15 O -0.308 6.308 16 C 0.213 3.787 17 O -0.327 6.327 18 H 0.276 0.724 19 H 0.137 0.863 20 H 0.106 0.894 21 H 0.062 0.938 22 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.270 -2.361 -0.961 3.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.443 4.443 8 H 0.107 0.893 9 C 0.156 3.844 10 N -0.183 5.183 11 C -0.031 4.031 12 C -0.325 4.325 13 C 0.034 3.966 14 C -0.194 4.194 15 O -0.224 6.224 16 C 0.100 3.900 17 O -0.243 6.243 18 H 0.088 0.912 19 H 0.154 0.846 20 H 0.124 0.876 21 H 0.080 0.920 22 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.887 -1.498 -0.852 2.555 hybrid contribution 0.924 -0.444 -0.096 1.030 sum 2.811 -1.942 -0.948 3.546 Atomic orbital electron populations 1.70124 1.07273 1.28293 1.27344 1.26126 0.94998 1.01340 0.93532 0.86216 0.80491 0.80163 0.79397 1.19217 1.19914 1.18352 1.19626 0.94738 0.89078 1.40831 0.89259 1.17860 0.87255 0.88724 0.90511 1.69015 1.04725 1.25978 1.18615 1.22462 0.99192 0.87394 0.94053 1.20363 0.89049 0.99088 1.24038 1.19755 0.92097 0.84519 1.00236 1.20891 0.81266 0.95872 1.21369 1.87077 1.22989 1.26405 1.85917 1.25307 0.86672 0.79487 0.98539 1.87078 1.19470 1.32518 1.85256 0.91232 0.84585 0.87594 0.92016 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.47 11.46 55.55 0.64 -17.84 14 2 C 0.07 1.67 5.50 -17.33 -0.10 1.58 14 3 Si 0.91 18.43 29.56 -169.99 -5.02 13.40 14 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 5 H -0.27 -5.35 7.11 56.52 0.40 -4.94 14 6 H -0.26 -5.21 7.11 56.52 0.40 -4.80 14 7 C -0.41 -11.28 9.13 -37.84 -0.35 -11.62 14 8 H 0.09 2.36 7.85 -52.48 -0.41 1.95 14 9 C 0.28 7.92 6.56 -84.89 -0.56 7.36 14 10 N -0.47 -12.86 7.86 -11.06 -0.09 -12.95 14 11 C 0.14 3.25 11.17 -17.50 -0.20 3.06 14 12 C -0.30 -7.04 10.13 -39.13 -0.40 -7.44 14 13 C 0.08 2.08 7.23 -38.86 -0.28 1.80 14 14 C -0.15 -3.90 6.94 -38.07 -0.26 -4.17 14 15 O -0.31 -7.48 11.38 -43.79 -0.50 -7.98 14 16 C 0.21 4.09 8.90 101.05 0.90 4.98 14 17 O -0.33 -7.31 11.39 -44.19 -0.50 -7.82 14 18 H 0.28 6.44 8.30 -40.82 -0.34 6.10 14 19 H 0.14 2.74 8.06 -52.49 -0.42 2.32 14 20 H 0.11 2.17 8.06 -52.49 -0.42 1.74 14 21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 14 22 H 0.11 1.64 8.14 -51.93 -0.42 1.21 14 LS Contribution 207.07 15.07 3.12 3.12 Total: -1.00 -30.35 207.07 -4.83 -35.18 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: -1.24 Total: -0.67 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -1.24 Total: -4.45 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.55 Total: -30.79 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.00 Total: -15.79 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.40 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -30.35 -4.83 -35.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870035.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.143 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds