Wall clock time and date at job start Mon Mar 30 2020 02:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86798 * 119.99520 * 2 1 4 4 H 1.48500 * 109.47406 * 269.99794 * 3 2 1 5 5 H 1.48502 * 109.47247 * 30.00259 * 3 2 1 6 6 H 1.48505 * 109.47170 * 150.00036 * 3 2 1 7 7 C 1.40028 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99632 * 179.97438 * 7 2 1 9 9 C 1.41069 * 120.00332 * 0.02562 * 7 2 1 10 10 N 1.33895 * 119.95204 * 0.02562 * 9 7 2 11 11 C 1.31393 * 121.76620 * 180.02562 * 10 9 7 12 12 C 1.38889 * 121.27345 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.41902 * 0.26324 * 12 11 10 14 14 C 1.39602 * 118.61795 * 359.52365 * 13 12 11 15 15 O 1.35912 * 108.65932 * 180.23567 * 14 13 12 16 16 C 1.44043 * 105.53765 * 17.34939 * 15 14 13 17 17 O 1.36041 * 132.67490 * 180.31034 * 13 12 11 18 18 H 0.97001 * 120.00777 * 359.97438 * 1 2 3 19 19 H 1.07996 * 119.37142 * 179.97438 * 11 10 9 20 20 H 1.08002 * 120.28838 * 179.97438 * 12 11 10 21 21 H 1.08997 * 110.56512 * 91.69862 * 16 15 14 22 22 H 1.08996 * 110.56006 * 214.54697 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.4891 2.0465 -1.4000 5 1 1.4390 2.6527 0.7001 6 1 3.5392 1.4403 0.7000 7 6 2.0079 -1.2127 -0.0005 8 1 3.0880 -1.2126 -0.0010 9 6 1.3027 -2.4344 -0.0016 10 7 -0.0363 -2.4334 -0.0027 11 6 -0.7288 -3.5500 -0.0032 12 6 -0.1001 -4.7884 -0.0033 13 6 1.2866 -4.8490 0.0028 14 6 2.0081 -3.6539 -0.0013 15 8 3.3352 -3.9472 0.0006 16 6 3.4264 -5.3255 -0.4079 17 8 2.1642 -5.8885 -0.0010 18 1 -0.4851 0.8400 0.0004 19 1 -1.8078 -3.5041 -0.0036 20 1 -0.6850 -5.6963 -0.0033 21 1 3.5470 -5.3973 -1.4888 22 1 4.2502 -5.8227 0.1041 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259870035.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:20 Heat of formation + Delta-G solvation = -47.852926 kcal Electronic energy + Delta-G solvation = -11698.842240 eV Core-core repulsion = 9412.374554 eV Total energy + Delta-G solvation = -2286.467686 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.69878 -39.16458 -36.97367 -35.49439 -31.85807 -31.32097 -27.76795 -26.52056 -23.93518 -23.37949 -19.94209 -18.50755 -18.37558 -18.01134 -16.91359 -16.52351 -15.31800 -15.11096 -14.72123 -14.48379 -14.10228 -13.67629 -13.41790 -12.90718 -12.75345 -12.33522 -12.12653 -11.74731 -11.23044 -9.88992 -9.72941 -9.10398 -8.43897 -6.58183 0.68032 0.79131 1.40840 1.51545 1.56141 2.15553 2.21616 2.73302 2.89636 3.68897 3.97486 4.10830 4.14453 4.20419 4.51869 4.79795 4.95515 5.16898 5.33131 5.49806 5.73359 6.13101 6.16930 6.64515 6.83367 7.95053 8.33863 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.051398 B = 0.013567 C = 0.010821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.637387 B = 2063.300053 C = 2586.992601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.083 0.917 9 C 0.247 3.753 10 N -0.498 5.498 11 C 0.129 3.871 12 C -0.297 4.297 13 C 0.077 3.923 14 C -0.175 4.175 15 O -0.330 6.330 16 C 0.204 3.796 17 O -0.329 6.329 18 H 0.287 0.713 19 H 0.172 0.828 20 H 0.139 0.861 21 H 0.085 0.915 22 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -2.492 -1.092 3.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.198 4.198 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.479 4.479 8 H 0.101 0.899 9 C 0.123 3.877 10 N -0.214 5.214 11 C -0.037 4.037 12 C -0.320 4.320 13 C 0.027 3.973 14 C -0.223 4.223 15 O -0.246 6.246 16 C 0.093 3.907 17 O -0.245 6.245 18 H 0.098 0.902 19 H 0.189 0.811 20 H 0.157 0.843 21 H 0.103 0.897 22 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.119 -1.667 -0.988 2.872 hybrid contribution 0.842 -0.574 -0.070 1.021 sum 2.961 -2.241 -1.058 3.862 Atomic orbital electron populations 1.70167 1.08751 1.29947 1.27460 1.27017 0.95890 1.04470 0.92443 0.85054 0.78836 0.75160 0.79756 1.18328 1.18380 1.18398 1.19877 0.94736 0.90396 1.42882 0.89886 1.18262 0.88131 0.89881 0.91384 1.68974 1.04803 1.27834 1.19770 1.23084 1.00781 0.86969 0.92897 1.20753 0.88900 1.00199 1.22168 1.20064 0.92950 0.84691 0.99643 1.21009 0.82484 0.96255 1.22544 1.87009 1.22056 1.29098 1.86449 1.25928 0.86637 0.77448 1.00719 1.87052 1.20160 1.31975 1.85317 0.90221 0.81086 0.84309 0.89722 0.82550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.96 11.46 21.84 0.25 -38.71 14 2 C 0.03 1.27 5.50 85.28 0.47 1.74 14 3 Si 0.99 37.73 29.56 68.60 2.03 39.76 14 4 H -0.26 -9.41 7.11 99.48 0.71 -8.71 14 5 H -0.26 -9.17 7.11 99.48 0.71 -8.47 14 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 14 7 C -0.45 -25.22 9.13 23.40 0.21 -25.00 14 8 H 0.08 4.56 7.85 -2.91 -0.02 4.53 14 9 C 0.25 14.29 6.56 40.17 0.26 14.55 14 10 N -0.50 -27.67 7.86 -188.91 -1.49 -29.16 14 11 C 0.13 6.06 11.17 84.91 0.95 7.01 14 12 C -0.30 -13.39 10.13 22.56 0.23 -13.16 14 13 C 0.08 3.76 7.23 22.73 0.16 3.92 14 14 C -0.18 -9.45 6.94 23.25 0.16 -9.29 14 15 O -0.33 -15.97 11.38 -69.30 -0.79 -16.76 14 16 C 0.20 7.41 8.90 113.37 1.01 8.42 14 17 O -0.33 -14.10 11.39 -70.75 -0.81 -14.90 14 18 H 0.29 13.33 8.30 -92.71 -0.77 12.56 14 19 H 0.17 6.57 8.06 -2.91 -0.02 6.55 14 20 H 0.14 5.25 8.06 -2.91 -0.02 5.23 14 21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 14 22 H 0.16 4.13 8.14 -2.39 -0.02 4.11 14 Total: -1.00 -66.09 207.07 3.90 -62.20 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.24 Total: 9.40 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 3.46 Total: -11.82 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.24 Total: -67.87 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.59 Total: -31.67 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -66.09 3.90 -62.20 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259870035.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.342 kcal (2) G-P(sol) polarization free energy of solvation -66.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds