Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47331 * 2 1 4 4 N 1.31968 * 120.60671 * 90.00179 * 3 2 1 5 5 C 1.31980 * 121.08531 * 180.02562 * 4 3 2 6 6 N 1.32014 * 122.36572 * 359.97438 * 5 4 3 7 7 C 1.31936 * 121.08721 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.61329 * 179.97438 * 7 6 5 9 9 C 1.41063 * 120.61511 * 270.00252 * 3 2 1 10 10 C 1.41424 * 121.04601 * 359.97438 * 9 3 2 11 11 H 1.07996 * 120.00070 * 47.33123 * 10 9 3 12 12 C 1.39957 * 119.99894 * 227.33539 * 10 9 3 13 13 N 1.30820 * 120.00057 * 19.66484 * 12 10 9 14 14 Si 1.86799 * 120.00208 * 199.65936 * 12 10 9 15 15 H 1.48500 * 109.46956 * 89.99940 * 14 12 10 16 16 H 1.48498 * 109.47169 * 210.00524 * 14 12 10 17 17 H 1.48505 * 109.46884 * 330.00042 * 14 12 10 18 18 H 1.08991 * 109.47525 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47318 * 300.00000 * 1 2 3 20 20 H 1.09007 * 109.46981 * 59.99252 * 1 2 3 21 21 H 1.09003 * 109.47112 * 240.00399 * 2 1 3 22 22 H 1.08996 * 109.47283 * 120.00375 * 2 1 3 23 23 H 1.07995 * 118.81935 * 179.97438 * 5 4 3 24 24 H 1.09003 * 109.47129 * 91.71176 * 8 7 6 25 25 H 1.09006 * 109.47153 * 211.70872 * 8 7 6 26 26 H 1.09000 * 109.47171 * 331.71579 * 8 7 6 27 27 H 0.97005 * 120.00281 * 174.86527 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2564 2.0543 1.1358 5 6 2.6959 3.2987 1.1468 6 7 2.9345 3.9737 0.0377 7 6 2.7412 3.4271 -1.1474 8 6 3.0165 4.2078 -2.4067 9 6 2.2718 2.0981 -1.2140 10 6 2.0485 1.4650 -2.4587 11 1 1.1289 0.9263 -2.6333 12 6 3.0192 1.5367 -3.4644 13 7 4.2561 1.8345 -3.1596 14 14 2.5488 1.2070 -5.2419 15 1 2.1404 2.4792 -5.8899 16 1 3.7134 0.6350 -5.9642 17 1 1.4186 0.2446 -5.2844 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5140 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.8665 3.7821 2.0974 24 1 4.0430 4.0297 -2.7274 25 1 2.3302 3.8870 -3.1904 26 1 2.8757 5.2711 -2.2131 27 1 4.9433 1.8114 -3.8439 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = 15.557632 kcal Electronic energy + Delta-G solvation = -11940.798554 eV Core-core repulsion = 9890.632312 eV Total energy + Delta-G solvation = -2050.166242 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -39.27607 -34.41636 -33.96063 -31.54046 -29.71871 -27.62027 -25.53432 -23.10326 -21.79802 -19.70115 -17.46998 -16.09452 -15.12415 -15.01754 -13.62061 -13.43861 -13.11885 -12.91354 -11.99290 -11.87757 -11.68364 -11.47503 -11.20834 -11.12142 -10.90954 -10.67666 -10.57292 -10.20919 -9.38319 -9.08555 -8.80144 -7.76012 -7.45975 -6.84693 -4.59160 2.55477 2.70097 3.03207 3.05688 3.06465 3.87222 4.57584 5.36831 5.47367 5.66858 5.82330 6.07115 6.17931 6.25169 6.55278 6.60776 6.76201 6.80877 6.86965 6.93745 7.01794 7.11174 7.32046 7.57399 7.76816 8.20779 8.32868 8.64573 8.89407 9.75291 10.13171 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.017114 C = 0.012615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.156000 B = 1635.725050 C = 2219.071581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.073 3.927 4 N -0.514 5.514 5 C 0.165 3.835 6 N -0.517 5.517 7 C 0.104 3.896 8 C -0.072 4.072 9 C 0.032 3.968 10 C -0.463 4.463 11 H 0.087 0.913 12 C 0.081 3.919 13 N -0.796 5.796 14 Si 0.903 3.097 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.262 1.262 18 H 0.047 0.953 19 H 0.047 0.953 20 H 0.054 0.946 21 H 0.080 0.920 22 H 0.058 0.942 23 H 0.160 0.840 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 -1.496 -1.553 3.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.076 4.076 4 N -0.228 5.228 5 C -0.120 4.120 6 N -0.231 5.231 7 C -0.046 4.046 8 C -0.129 4.129 9 C 0.026 3.974 10 C -0.494 4.494 11 H 0.105 0.895 12 C -0.137 4.137 13 N -0.422 5.422 14 Si 0.727 3.273 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.186 1.186 18 H 0.066 0.934 19 H 0.066 0.934 20 H 0.073 0.927 21 H 0.099 0.901 22 H 0.077 0.923 23 H 0.177 0.823 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.613 -0.940 -0.740 2.873 hybrid contribution -0.094 -0.519 -1.539 1.627 sum -2.707 -1.459 -2.280 3.828 Atomic orbital electron populations 1.21651 0.96023 1.00352 1.01554 1.20060 0.94829 0.91935 1.01929 1.21706 1.01987 0.95635 0.88304 1.67528 1.12932 1.10722 1.31664 1.23637 1.03702 0.89163 0.95502 1.67584 1.16141 1.40088 0.99309 1.21693 0.99371 0.91626 0.91916 1.20449 1.02572 0.96138 0.93720 1.18816 0.92143 0.92176 0.94252 1.19200 1.03850 1.30721 0.95620 0.89508 1.25765 0.94276 0.92948 1.00674 1.69779 1.01099 1.35166 1.36124 0.86388 0.79339 0.79681 0.81854 1.19110 1.20330 1.18570 0.93367 0.93428 0.92702 0.90125 0.92321 0.82304 0.90520 0.91696 0.94118 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.90 37.16 0.37 -2.10 15 2 C -0.05 -1.03 5.90 -27.88 -0.16 -1.19 15 3 C 0.07 1.80 6.15 -81.46 -0.50 1.30 15 4 N -0.51 -12.79 10.35 -10.18 -0.11 -12.90 15 5 C 0.16 4.01 12.26 -91.81 -1.13 2.88 15 6 N -0.52 -13.27 10.35 -10.18 -0.11 -13.38 15 7 C 0.10 2.69 6.55 -81.46 -0.53 2.16 15 8 C -0.07 -1.66 8.52 36.00 0.31 -1.35 15 9 C 0.03 0.84 5.23 -106.53 -0.56 0.28 15 10 C -0.46 -11.42 7.03 -37.73 -0.27 -11.68 15 11 H 0.09 2.05 7.64 -52.49 -0.40 1.65 15 12 C 0.08 1.91 3.63 -17.34 -0.06 1.85 15 13 N -0.80 -19.72 10.87 55.55 0.60 -19.12 15 14 Si 0.90 17.71 29.61 -169.99 -5.03 12.68 15 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 16 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 17 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 18 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 20 H 0.05 1.01 7.88 -51.93 -0.41 0.60 15 21 H 0.08 1.69 7.22 -51.93 -0.37 1.31 15 22 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 23 H 0.16 3.30 8.06 -52.49 -0.42 2.88 15 24 H 0.08 1.83 6.67 -51.93 -0.35 1.48 15 25 H 0.06 1.47 6.64 -51.93 -0.34 1.13 15 26 H 0.04 0.86 8.14 -51.93 -0.42 0.43 15 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 15 LS Contribution 232.65 15.07 3.51 3.51 Total: -1.00 -27.66 232.65 -6.79 -34.45 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.12 Total: 2.61 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.54 Total: -7.85 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.39 Total: -45.39 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -27.66 -6.79 -34.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.012 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds