Wall clock time and date at job start Mon Mar 30 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47331 * 2 1 4 4 N 1.31968 * 120.60671 * 90.00179 * 3 2 1 5 5 C 1.31980 * 121.08531 * 180.02562 * 4 3 2 6 6 N 1.32014 * 122.36572 * 359.97438 * 5 4 3 7 7 C 1.31936 * 121.08721 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.61329 * 179.97438 * 7 6 5 9 9 C 1.41063 * 120.61511 * 270.00252 * 3 2 1 10 10 C 1.41424 * 121.04601 * 359.97438 * 9 3 2 11 11 H 1.07996 * 120.00070 * 47.33123 * 10 9 3 12 12 C 1.39957 * 119.99894 * 227.33539 * 10 9 3 13 13 N 1.30820 * 120.00057 * 19.66484 * 12 10 9 14 14 Si 1.86799 * 120.00208 * 199.65936 * 12 10 9 15 15 H 1.48500 * 109.46956 * 89.99940 * 14 12 10 16 16 H 1.48498 * 109.47169 * 210.00524 * 14 12 10 17 17 H 1.48505 * 109.46884 * 330.00042 * 14 12 10 18 18 H 1.08991 * 109.47525 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47318 * 300.00000 * 1 2 3 20 20 H 1.09007 * 109.46981 * 59.99252 * 1 2 3 21 21 H 1.09003 * 109.47112 * 240.00399 * 2 1 3 22 22 H 1.08996 * 109.47283 * 120.00375 * 2 1 3 23 23 H 1.07995 * 118.81935 * 179.97438 * 5 4 3 24 24 H 1.09003 * 109.47129 * 91.71176 * 8 7 6 25 25 H 1.09006 * 109.47153 * 211.70872 * 8 7 6 26 26 H 1.09000 * 109.47171 * 331.71579 * 8 7 6 27 27 H 0.97005 * 120.00281 * 174.86527 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2564 2.0543 1.1358 5 6 2.6959 3.2987 1.1468 6 7 2.9345 3.9737 0.0377 7 6 2.7412 3.4271 -1.1474 8 6 3.0165 4.2078 -2.4067 9 6 2.2718 2.0981 -1.2140 10 6 2.0485 1.4650 -2.4587 11 1 1.1289 0.9263 -2.6333 12 6 3.0192 1.5367 -3.4644 13 7 4.2561 1.8345 -3.1596 14 14 2.5488 1.2070 -5.2419 15 1 2.1404 2.4792 -5.8899 16 1 3.7134 0.6350 -5.9642 17 1 1.4186 0.2446 -5.2844 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5140 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 2.8665 3.7821 2.0974 24 1 4.0430 4.0297 -2.7274 25 1 2.3302 3.8870 -3.1904 26 1 2.8757 5.2711 -2.2131 27 1 4.9433 1.8114 -3.8439 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:00 Heat of formation + Delta-G solvation = 0.187500 kcal Electronic energy + Delta-G solvation = -11941.465053 eV Core-core repulsion = 9890.632312 eV Total energy + Delta-G solvation = -2050.832740 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15540 -36.26081 -35.73032 -33.36420 -31.48314 -29.49092 -27.36896 -24.78726 -23.66620 -21.51079 -19.33863 -17.94801 -16.91155 -16.80791 -15.46274 -15.16561 -14.70740 -14.57730 -13.76336 -13.66618 -13.44188 -13.21597 -12.98286 -12.89425 -12.54891 -12.25262 -12.14432 -11.80144 -11.19625 -10.94197 -10.69552 -9.67738 -9.37185 -8.64446 -6.48003 0.68613 0.76953 1.44517 1.49618 1.56133 2.23414 2.76337 3.47733 3.72824 3.83450 4.11416 4.48532 4.59581 4.64155 4.78973 4.97595 5.02127 5.08340 5.13895 5.17108 5.31908 5.44025 5.48153 5.72906 5.89596 6.32930 6.44436 6.79424 6.98700 7.83051 8.35700 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034681 B = 0.017114 C = 0.012615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.156000 B = 1635.725050 C = 2219.071581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.048 4.048 3 C 0.059 3.941 4 N -0.523 5.523 5 C 0.152 3.848 6 N -0.530 5.530 7 C 0.074 3.926 8 C -0.061 4.061 9 C 0.005 3.995 10 C -0.476 4.476 11 H 0.092 0.908 12 C 0.049 3.951 13 N -0.826 5.826 14 Si 0.970 3.030 15 H -0.261 1.261 16 H -0.273 1.273 17 H -0.255 1.255 18 H 0.082 0.918 19 H 0.044 0.956 20 H 0.045 0.955 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.190 0.810 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -2.185 -2.352 4.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.091 4.091 4 N -0.238 5.238 5 C -0.133 4.133 6 N -0.245 5.245 7 C -0.075 4.075 8 C -0.118 4.118 9 C -0.001 4.001 10 C -0.506 4.506 11 H 0.110 0.890 12 C -0.166 4.166 13 N -0.452 5.452 14 Si 0.791 3.209 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.179 1.179 18 H 0.101 0.899 19 H 0.063 0.937 20 H 0.064 0.936 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.206 0.794 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.284 -1.623 -1.531 3.970 hybrid contribution 0.148 -0.320 -1.229 1.278 sum -3.136 -1.942 -2.759 4.607 Atomic orbital electron populations 1.21574 0.93676 1.02432 1.00909 1.20131 0.96775 0.89612 1.02064 1.22374 1.01326 0.97254 0.88110 1.67625 1.13406 1.11018 1.31712 1.24292 1.03170 0.89374 0.96429 1.67627 1.16737 1.40473 0.99663 1.22130 1.00304 0.92306 0.92766 1.20353 1.01882 0.96697 0.92842 1.19184 0.92954 0.92630 0.95361 1.19398 1.04293 1.31075 0.95881 0.88996 1.26503 0.93697 0.92129 1.04297 1.69836 1.02191 1.35472 1.37749 0.85364 0.79191 0.79775 0.76522 1.18530 1.19808 1.17853 0.89912 0.93724 0.93631 0.90596 0.91425 0.79358 0.91415 0.91579 0.92710 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.90 71.98 0.71 -3.62 15 2 C -0.05 -1.93 5.90 29.85 0.18 -1.75 15 3 C 0.06 2.90 6.15 43.23 0.27 3.16 15 4 N -0.52 -25.81 10.35 -186.12 -1.93 -27.74 15 5 C 0.15 7.33 12.26 180.76 2.22 9.55 15 6 N -0.53 -27.22 10.35 -186.11 -1.93 -29.14 15 7 C 0.07 3.84 6.55 43.25 0.28 4.12 15 8 C -0.06 -2.80 8.52 71.23 0.61 -2.19 15 9 C 0.00 0.25 5.23 -21.10 -0.11 0.14 15 10 C -0.48 -23.21 7.03 23.47 0.16 -23.05 15 11 H 0.09 4.27 7.64 -2.91 -0.02 4.25 15 12 C 0.05 2.26 3.63 85.26 0.31 2.57 15 13 N -0.83 -40.61 10.87 21.83 0.24 -40.38 15 14 Si 0.97 35.07 29.61 68.60 2.03 37.10 15 15 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 16 H -0.27 -9.61 7.11 99.48 0.71 -8.90 15 17 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 18 H 0.08 2.21 8.14 -2.39 -0.02 2.19 15 19 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.04 1.61 7.88 -2.38 -0.02 1.59 15 21 H 0.08 3.11 7.22 -2.39 -0.02 3.09 15 22 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 23 H 0.19 7.62 8.06 -2.91 -0.02 7.59 15 24 H 0.07 3.23 6.67 -2.39 -0.02 3.22 15 25 H 0.07 2.97 6.64 -2.38 -0.02 2.95 15 26 H 0.05 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.29 13.01 8.30 -92.70 -0.77 12.24 15 Total: -1.00 -57.52 232.65 4.20 -53.32 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.16 Total: 17.90 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 4.63 Total: -11.07 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -3.62 Total: -97.25 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -57.52 4.20 -53.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.507 kcal (2) G-P(sol) polarization free energy of solvation -57.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds