Wall clock time and date at job start Mon Mar 30 2020 02:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35040 * 126.40017 * 2 1 4 4 N 1.30505 * 108.70040 * 179.73496 * 3 2 1 5 5 C 1.34124 * 109.25539 * 0.26601 * 4 3 2 6 6 C 1.34668 * 108.02243 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.59369 * 180.02562 * 6 5 4 8 8 C 1.50696 * 115.55085 * 138.03801 * 7 6 5 9 9 H 1.08001 * 120.00301 * 145.16186 * 8 7 6 10 10 C 1.37881 * 120.00106 * 325.15319 * 8 7 6 11 11 N 1.31516 * 119.99809 * 351.53904 * 10 8 7 12 12 Si 1.86801 * 120.00131 * 171.53113 * 10 8 7 13 13 H 1.48502 * 109.46817 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47081 * 120.00492 * 12 10 8 15 15 H 1.48500 * 109.46846 * 240.00576 * 12 10 8 16 16 C 1.53008 * 117.49831 * 352.32874 * 7 6 5 17 17 C 1.53003 * 60.00023 * 252.50922 * 16 7 6 18 18 H 1.08994 * 109.46583 * 95.53121 * 1 2 3 19 19 H 1.08994 * 109.47122 * 215.53421 * 1 2 3 20 20 H 1.08996 * 109.46628 * 335.52814 * 1 2 3 21 21 H 1.08002 * 125.64777 * 0.02562 * 3 2 1 22 22 H 1.07998 * 125.98617 * 179.97438 * 5 4 3 23 23 H 0.96996 * 119.99722 * 175.04964 * 11 10 8 24 24 H 1.09002 * 117.49435 * 0.02562 * 16 7 6 25 25 H 1.09005 * 117.49610 * 145.01713 * 16 7 6 26 26 H 1.08997 * 117.49735 * 252.50627 * 17 16 7 27 27 H 1.08997 * 117.51266 * 107.48252 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5097 0.6902 0.0057 5 6 3.5461 -0.6506 0.0037 6 6 2.2773 -1.1018 -0.0030 7 6 1.8363 -2.5428 -0.0070 8 6 0.6750 -2.8697 0.8961 9 1 -0.0470 -3.6158 0.5988 10 6 0.5343 -2.2163 2.1021 11 7 1.4950 -1.4329 2.5415 12 14 -1.0209 -2.4435 3.1116 13 1 -1.9407 -3.3687 2.4022 14 1 -0.6714 -3.0137 4.4374 15 1 -1.6865 -1.1292 3.2978 16 6 2.9167 -3.6118 -0.1843 17 6 1.9435 -3.3109 -1.3259 18 1 -0.3632 -0.0991 -1.0229 19 1 -0.3633 -0.8362 0.5972 20 1 -0.3632 0.9353 0.4257 21 1 1.9335 2.1144 0.0004 22 1 4.4369 -1.2612 0.0068 23 1 1.3673 -0.9176 3.3533 24 1 3.9464 -3.2726 -0.2976 25 1 2.7876 -4.5516 0.3526 26 1 1.1743 -4.0528 -1.5403 27 1 2.3327 -2.7738 -2.1909 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259883098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:31 Heat of formation + Delta-G solvation = 88.133993 kcal Electronic energy + Delta-G solvation = -12247.515198 eV Core-core repulsion = 10200.496103 eV Total energy + Delta-G solvation = -2047.019094 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.81437 -36.20874 -33.08593 -32.01856 -28.00952 -26.00060 -25.64584 -21.45372 -21.21286 -19.91026 -18.60795 -16.72614 -15.48557 -14.83126 -14.37214 -13.84434 -13.07963 -12.95301 -12.44839 -11.99349 -11.77291 -11.74354 -11.06505 -10.89903 -10.60325 -10.40014 -9.87558 -9.49234 -9.10039 -8.73422 -8.38129 -8.24647 -6.99136 -6.11848 -4.26723 3.10401 3.23030 3.24971 3.36745 4.07807 4.20488 4.36667 4.87364 5.48232 5.65465 5.71625 5.84494 6.04639 6.28593 6.40880 6.52002 6.57245 6.62309 6.80688 6.99685 7.09512 7.24465 7.63200 7.69614 8.02410 8.22593 8.46014 8.73112 9.25842 9.30935 10.81703 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034198 B = 0.019276 C = 0.015117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.554201 B = 1452.205392 C = 1851.729427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.431 5.431 3 C 0.131 3.869 4 N -0.501 5.501 5 C -0.074 4.074 6 C 0.128 3.872 7 C 0.100 3.900 8 C -0.501 4.501 9 H 0.067 0.933 10 C 0.070 3.930 11 N -0.849 5.849 12 Si 0.880 3.120 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.280 1.280 16 C -0.186 4.186 17 C -0.202 4.202 18 H 0.056 0.944 19 H 0.113 0.887 20 H 0.061 0.939 21 H 0.183 0.817 22 H 0.148 0.852 23 H 0.263 0.737 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 1.243 -3.694 5.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.112 5.112 3 C -0.149 4.149 4 N -0.220 5.220 5 C -0.220 4.220 6 C 0.010 3.990 7 C 0.099 3.901 8 C -0.539 4.539 9 H 0.085 0.915 10 C -0.136 4.136 11 N -0.483 5.483 12 Si 0.706 3.294 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.225 4.225 17 C -0.239 4.239 18 H 0.075 0.925 19 H 0.131 0.869 20 H 0.080 0.920 21 H 0.200 0.800 22 H 0.165 0.835 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.098 0.902 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.539 1.887 -3.475 4.699 hybrid contribution -1.503 -0.500 0.817 1.782 sum -4.041 1.388 -2.658 5.032 Atomic orbital electron populations 1.22129 0.78203 1.04562 1.02377 1.44648 1.06814 1.06335 1.53437 1.24234 0.86290 0.92761 1.11616 1.69971 1.19552 1.12517 1.20009 1.21464 0.95674 0.90507 1.14339 1.20234 0.89278 0.88499 1.00981 1.17087 0.95855 0.83668 0.93521 1.20557 1.08431 1.23512 1.01377 0.91534 1.25043 0.96118 0.95732 0.96700 1.70082 1.29945 1.26316 1.21968 0.86737 0.83547 0.78342 0.80785 1.19304 1.20659 1.20629 1.22959 0.94747 1.02201 1.02572 1.22958 1.03314 1.05044 0.92618 0.92522 0.86884 0.92007 0.80006 0.83500 0.92693 0.90933 0.89884 0.90202 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 10.66 59.85 0.64 2.00 15 2 N -0.43 -9.68 2.80 -121.37 -0.34 -10.02 15 3 C 0.13 2.85 12.56 -90.37 -1.13 1.71 15 4 N -0.50 -12.05 11.25 -14.67 -0.17 -12.22 15 5 C -0.07 -1.82 11.22 -17.81 -0.20 -2.02 15 6 C 0.13 3.12 4.34 -81.60 -0.35 2.77 15 7 C 0.10 2.43 2.22 -156.81 -0.35 2.08 15 8 C -0.50 -12.72 7.55 -34.44 -0.26 -12.98 15 9 H 0.07 1.67 7.83 -52.49 -0.41 1.26 15 10 C 0.07 1.77 3.39 -17.82 -0.06 1.71 15 11 N -0.85 -23.02 11.41 55.43 0.63 -22.39 15 12 Si 0.88 19.43 29.12 -169.99 -4.95 14.48 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.42 15 14 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 15 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 16 C -0.19 -4.12 9.72 -26.73 -0.26 -4.38 15 17 C -0.20 -4.25 9.94 -26.73 -0.27 -4.51 15 18 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 19 H 0.11 2.44 4.03 -51.93 -0.21 2.23 15 20 H 0.06 1.01 8.13 -51.93 -0.42 0.59 15 21 H 0.18 3.15 8.06 -52.49 -0.42 2.72 15 22 H 0.15 3.42 7.15 -52.49 -0.38 3.05 15 23 H 0.26 6.96 8.32 -40.82 -0.34 6.62 15 24 H 0.07 1.52 6.97 -51.93 -0.36 1.16 15 25 H 0.08 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.08 1.59 8.14 -51.93 -0.42 1.17 15 27 H 0.07 1.42 8.14 -51.93 -0.42 1.00 15 LS Contribution 230.55 15.07 3.47 3.47 Total: -1.00 -29.00 230.55 -6.62 -35.62 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -3.03 Total: 4.67 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.25 Total: -13.61 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.13 Total: -44.63 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.95 Total: 14.48 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.00 -6.62 -35.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.756 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds