Wall clock time and date at job start Mon Mar 30 2020 02:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35040 * 126.40017 * 2 1 4 4 N 1.30505 * 108.70040 * 179.73496 * 3 2 1 5 5 C 1.34124 * 109.25539 * 0.26601 * 4 3 2 6 6 C 1.34668 * 108.02243 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.59369 * 180.02562 * 6 5 4 8 8 C 1.50696 * 115.55085 * 138.03801 * 7 6 5 9 9 H 1.08001 * 120.00301 * 145.16186 * 8 7 6 10 10 C 1.37881 * 120.00106 * 325.15319 * 8 7 6 11 11 N 1.31516 * 119.99809 * 351.53904 * 10 8 7 12 12 Si 1.86801 * 120.00131 * 171.53113 * 10 8 7 13 13 H 1.48502 * 109.46817 * 0.02562 * 12 10 8 14 14 H 1.48491 * 109.47081 * 120.00492 * 12 10 8 15 15 H 1.48500 * 109.46846 * 240.00576 * 12 10 8 16 16 C 1.53008 * 117.49831 * 352.32874 * 7 6 5 17 17 C 1.53003 * 60.00023 * 252.50922 * 16 7 6 18 18 H 1.08994 * 109.46583 * 95.53121 * 1 2 3 19 19 H 1.08994 * 109.47122 * 215.53421 * 1 2 3 20 20 H 1.08996 * 109.46628 * 335.52814 * 1 2 3 21 21 H 1.08002 * 125.64777 * 0.02562 * 3 2 1 22 22 H 1.07998 * 125.98617 * 179.97438 * 5 4 3 23 23 H 0.96996 * 119.99722 * 175.04964 * 11 10 8 24 24 H 1.09002 * 117.49435 * 0.02562 * 16 7 6 25 25 H 1.09005 * 117.49610 * 145.01713 * 16 7 6 26 26 H 1.08997 * 117.49735 * 252.50627 * 17 16 7 27 27 H 1.08997 * 117.51266 * 107.48252 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5097 0.6902 0.0057 5 6 3.5461 -0.6506 0.0037 6 6 2.2773 -1.1018 -0.0030 7 6 1.8363 -2.5428 -0.0070 8 6 0.6750 -2.8697 0.8961 9 1 -0.0470 -3.6158 0.5988 10 6 0.5343 -2.2163 2.1021 11 7 1.4950 -1.4329 2.5415 12 14 -1.0209 -2.4435 3.1116 13 1 -1.9407 -3.3687 2.4022 14 1 -0.6714 -3.0137 4.4374 15 1 -1.6865 -1.1292 3.2978 16 6 2.9167 -3.6118 -0.1843 17 6 1.9435 -3.3109 -1.3259 18 1 -0.3632 -0.0991 -1.0229 19 1 -0.3633 -0.8362 0.5972 20 1 -0.3632 0.9353 0.4257 21 1 1.9335 2.1144 0.0004 22 1 4.4369 -1.2612 0.0068 23 1 1.3673 -0.9176 3.3533 24 1 3.9464 -3.2726 -0.2976 25 1 2.7876 -4.5516 0.3526 26 1 1.1743 -4.0528 -1.5403 27 1 2.3327 -2.7738 -2.1909 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259883098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:30 Heat of formation + Delta-G solvation = 72.460126 kcal Electronic energy + Delta-G solvation = -12248.194868 eV Core-core repulsion = 10200.496103 eV Total energy + Delta-G solvation = -2047.698764 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.54429 -37.98044 -34.84029 -33.85214 -29.75902 -27.81874 -27.34754 -23.23329 -22.94406 -21.62469 -20.42055 -18.52498 -17.22493 -16.66586 -16.05210 -15.58074 -14.82802 -14.65226 -14.17121 -13.70557 -13.48086 -13.32841 -12.90462 -12.61379 -12.36350 -12.10236 -11.68299 -11.29152 -10.88519 -10.56674 -10.22818 -9.95947 -8.79782 -8.01606 -6.22985 1.36192 1.44051 1.52582 1.64289 2.37050 2.45791 2.58050 2.99833 3.68783 4.05467 4.16166 4.27962 4.54957 4.62561 4.67526 4.76878 4.94059 4.99489 5.05953 5.25751 5.33290 5.53744 5.66315 5.92450 6.22742 6.34445 6.73989 6.87211 7.36294 7.51327 8.88959 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.034198 B = 0.019276 C = 0.015117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.554201 B = 1452.205392 C = 1851.729427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.437 5.437 3 C 0.139 3.861 4 N -0.528 5.528 5 C -0.099 4.099 6 C 0.115 3.885 7 C 0.068 3.932 8 C -0.508 4.508 9 H 0.063 0.937 10 C 0.039 3.961 11 N -0.881 5.881 12 Si 0.937 3.063 13 H -0.262 1.262 14 H -0.292 1.292 15 H -0.271 1.271 16 C -0.188 4.188 17 C -0.177 4.177 18 H 0.079 0.921 19 H 0.090 0.910 20 H 0.091 0.909 21 H 0.225 0.775 22 H 0.145 0.855 23 H 0.257 0.743 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 1.690 -4.167 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.118 5.118 3 C -0.142 4.142 4 N -0.248 5.248 5 C -0.244 4.244 6 C -0.004 4.004 7 C 0.066 3.934 8 C -0.546 4.546 9 H 0.081 0.919 10 C -0.164 4.164 11 N -0.516 5.516 12 Si 0.762 3.238 13 H -0.186 1.186 14 H -0.218 1.218 15 H -0.197 1.197 16 C -0.227 4.227 17 C -0.215 4.215 18 H 0.098 0.902 19 H 0.109 0.891 20 H 0.109 0.891 21 H 0.241 0.759 22 H 0.163 0.837 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.819 2.316 -3.966 5.973 hybrid contribution -1.109 -0.644 0.934 1.587 sum -4.928 1.672 -3.032 6.023 Atomic orbital electron populations 1.22283 0.76516 1.05185 1.03698 1.44872 1.07981 1.05955 1.52952 1.25074 0.85643 0.94270 1.09200 1.69945 1.21119 1.12256 1.21490 1.21597 0.96073 0.91130 1.15581 1.20297 0.89569 0.89117 1.01377 1.17264 0.96470 0.84208 0.95420 1.20736 1.08721 1.23353 1.01753 0.91875 1.25554 0.98219 0.95314 0.97334 1.70225 1.31591 1.27559 1.22235 0.85852 0.80712 0.78587 0.78673 1.18583 1.21829 1.19665 1.22960 0.94982 1.01478 1.03251 1.22950 1.02634 1.04065 0.91853 0.90215 0.89148 0.89086 0.75861 0.83701 0.93342 0.90449 0.90076 0.89029 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.35 10.66 127.77 1.36 3.71 15 2 N -0.44 -18.85 2.80 -537.89 -1.51 -20.36 15 3 C 0.14 5.74 12.56 180.26 2.26 8.00 15 4 N -0.53 -24.97 11.25 -200.31 -2.25 -27.23 15 5 C -0.10 -4.84 11.22 83.52 0.94 -3.90 15 6 C 0.11 5.53 4.34 40.95 0.18 5.70 15 7 C 0.07 3.23 2.22 -53.67 -0.12 3.11 15 8 C -0.51 -25.36 7.55 25.60 0.19 -25.16 15 9 H 0.06 3.11 7.83 -2.91 -0.02 3.09 15 10 C 0.04 1.93 3.39 84.66 0.29 2.21 15 11 N -0.88 -47.55 11.41 21.45 0.24 -47.30 15 12 Si 0.94 39.32 29.12 68.60 2.00 41.32 15 13 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 14 H -0.29 -12.70 7.11 99.48 0.71 -11.99 15 15 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 16 C -0.19 -8.20 9.72 30.60 0.30 -7.90 15 17 C -0.18 -7.19 9.94 30.60 0.30 -6.88 15 18 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 19 H 0.09 3.74 4.03 -2.39 -0.01 3.73 15 20 H 0.09 2.69 8.13 -2.39 -0.02 2.67 15 21 H 0.23 6.93 8.06 -2.91 -0.02 6.91 15 22 H 0.15 6.88 7.15 -2.91 -0.02 6.86 15 23 H 0.26 13.61 8.32 -92.71 -0.77 12.84 15 24 H 0.08 3.24 6.97 -2.39 -0.02 3.23 15 25 H 0.08 3.50 8.14 -2.38 -0.02 3.48 15 26 H 0.09 3.46 8.14 -2.39 -0.02 3.44 15 27 H 0.08 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -60.31 230.55 5.35 -54.97 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 1.16 Total: 19.71 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 5.70 Total: -21.10 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.51 Total: -94.89 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.00 Total: 41.32 kcal Total: -60.31 5.35 -54.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259883098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.426 kcal (2) G-P(sol) polarization free energy of solvation -60.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds