Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48501 * 109.46893 * 270.00008 * 3 2 1 5 5 H 1.48498 * 109.47346 * 30.00131 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00506 * 3 2 1 7 7 C 1.37872 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00091 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00092 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.39871 * 125.89729 * 125.00154 * 10 9 7 12 12 C 1.35317 * 107.92248 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.12921 * 179.97438 * 12 11 10 14 14 C 1.53001 * 117.51956 * 146.28059 * 13 12 11 15 15 C 1.52999 * 60.00190 * 107.47765 * 14 13 12 16 16 N 1.34953 * 107.74386 * 0.22086 * 12 11 10 17 17 H 0.97002 * 126.03226 * 179.77117 * 16 12 11 18 18 N 1.30836 * 125.90024 * 304.95941 * 10 9 7 19 19 H 0.96997 * 119.99874 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46779 * 59.99880 * 9 7 2 21 21 H 1.08998 * 109.47115 * 299.99938 * 9 7 2 22 22 H 1.07999 * 126.04147 * 359.97438 * 11 10 9 23 23 H 1.09002 * 115.55088 * 0.57668 * 13 12 11 24 24 H 1.09001 * 117.49733 * 214.97195 * 14 13 12 25 25 H 1.08995 * 117.49577 * 359.97438 * 14 13 12 26 26 H 1.09004 * 117.50150 * 252.51496 * 15 14 13 27 27 H 1.09004 * 117.51638 * 107.47550 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0138 -2.6148 -0.0010 11 6 4.8996 -3.1716 -0.9293 12 6 5.1034 -4.4647 -0.5867 13 6 5.9876 -5.4470 -1.3108 14 6 6.7115 -6.5001 -0.4695 15 6 5.5327 -6.9072 -1.3557 16 7 4.3686 -4.7186 0.5164 17 1 4.3162 -5.5667 0.9844 18 7 3.6974 -3.5404 0.8679 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 5.3426 -2.6599 -1.7709 23 1 6.5089 -5.0552 -2.1842 24 1 7.7092 -6.8011 -0.7893 25 1 6.5487 -6.4823 0.6081 26 1 4.5940 -7.1573 -0.8612 27 1 5.7544 -7.4758 -2.2589 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259884545.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = 89.131851 kcal Electronic energy + Delta-G solvation = -11215.827995 eV Core-core repulsion = 9168.852171 eV Total energy + Delta-G solvation = -2046.975824 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.69241 -37.05230 -33.29728 -31.37761 -29.47640 -28.11262 -23.48960 -22.60107 -22.57591 -19.87889 -18.58347 -17.15535 -16.62620 -15.49233 -14.30200 -14.10326 -13.78308 -13.05505 -12.74705 -12.33091 -11.89654 -11.81002 -11.71911 -10.96024 -10.68423 -10.60224 -10.34142 -10.02801 -9.63332 -9.28247 -8.51772 -8.32415 -7.95171 -5.97299 -3.95019 2.31760 3.35065 3.41302 3.44479 3.46354 3.52304 3.90363 4.44382 4.49820 4.67088 4.83247 5.19730 5.34275 5.40481 5.59025 5.64683 5.82947 5.86204 6.25078 6.35382 6.65865 7.00278 7.22739 7.40663 7.76059 7.85909 8.50091 8.63681 9.10515 9.62253 11.16208 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.082454 B = 0.007851 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.500747 B = 3565.630042 C = 3700.806508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.054 3.946 10 C 0.124 3.876 11 C -0.264 4.264 12 C 0.097 3.903 13 C -0.086 4.086 14 C -0.176 4.176 15 C -0.175 4.175 16 N -0.492 5.492 17 H 0.426 0.574 18 N -0.283 5.283 19 H 0.263 0.737 20 H 0.037 0.963 21 H 0.034 0.966 22 H 0.140 0.860 23 H 0.127 0.873 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.319 -10.353 -2.605 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.093 0.907 9 C 0.015 3.985 10 C -0.043 4.043 11 C -0.294 4.294 12 C -0.031 4.031 13 C -0.106 4.106 14 C -0.214 4.214 15 C -0.213 4.213 16 N -0.199 5.199 17 H 0.268 0.732 18 N -0.105 5.105 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.052 0.948 22 H 0.158 0.842 23 H 0.145 0.855 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.479 -10.475 -1.564 16.367 hybrid contribution 0.735 0.567 -0.561 1.084 sum 13.213 -9.907 -2.125 16.651 Atomic orbital electron populations 1.69909 1.06246 1.26799 1.51198 1.24984 0.94779 0.98942 0.94717 0.86809 0.80445 0.83717 0.78573 1.20132 1.21306 1.18863 1.20954 0.88218 0.94828 1.50492 0.90658 1.18278 0.97579 0.85058 0.97635 1.22762 0.92930 0.97358 0.91284 1.21154 1.08712 0.93825 1.05716 1.19965 0.96777 0.95320 0.91015 1.20594 1.00623 0.88389 1.00947 1.23044 0.97353 1.02897 0.98069 1.23053 0.98934 0.96705 1.02576 1.46328 1.37907 1.12422 1.23270 0.73213 1.77517 1.18083 0.90828 1.24046 0.92724 0.94538 0.94790 0.84169 0.85470 0.87985 0.88878 0.88781 0.87931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.47 13.96 55.43 0.77 -27.70 15 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 15 3 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 6 H -0.26 -6.25 6.54 56.52 0.37 -5.88 15 7 C -0.51 -15.10 9.62 -34.44 -0.33 -15.43 15 8 H 0.08 2.49 7.98 -52.48 -0.42 2.07 15 9 C 0.05 1.36 4.62 -29.04 -0.13 1.22 15 10 C 0.12 2.88 6.43 -82.41 -0.53 2.35 15 11 C -0.26 -5.10 10.64 -40.01 -0.43 -5.52 15 12 C 0.10 1.60 6.63 -82.26 -0.55 1.05 15 13 C -0.09 -0.99 6.25 -91.77 -0.57 -1.57 15 14 C -0.18 -1.62 10.22 -26.73 -0.27 -1.89 15 15 C -0.18 -1.67 10.22 -26.73 -0.27 -1.94 15 16 N -0.49 -8.64 7.31 33.48 0.24 -8.40 15 17 H 0.43 5.92 8.96 -182.60 -1.64 4.28 15 18 N -0.28 -6.50 12.66 33.67 0.43 -6.07 15 19 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 20 H 0.04 0.92 7.20 -51.93 -0.37 0.55 15 21 H 0.03 0.81 7.55 -51.93 -0.39 0.41 15 22 H 0.14 2.36 8.06 -52.49 -0.42 1.94 15 23 H 0.13 1.29 8.14 -51.93 -0.42 0.86 15 24 H 0.10 0.75 8.14 -51.93 -0.42 0.33 15 25 H 0.09 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 15 LS Contribution 241.03 15.07 3.63 3.63 Total: -1.00 -33.60 241.03 -7.30 -40.91 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.52 Total: 0.40 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.18 Total: -19.85 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 1.44 Total: -42.17 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.60 -7.30 -40.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884545.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.037 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds