Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99840 * 2 1 4 4 H 1.48501 * 109.46893 * 270.00008 * 3 2 1 5 5 H 1.48498 * 109.47346 * 30.00131 * 3 2 1 6 6 H 1.48496 * 109.47085 * 150.00506 * 3 2 1 7 7 C 1.37872 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00091 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00092 * 179.97438 * 7 2 1 10 10 C 1.50696 * 109.47207 * 179.97438 * 9 7 2 11 11 C 1.39871 * 125.89729 * 125.00154 * 10 9 7 12 12 C 1.35317 * 107.92248 * 179.97438 * 11 10 9 13 13 C 1.50701 * 126.12921 * 179.97438 * 12 11 10 14 14 C 1.53001 * 117.51956 * 146.28059 * 13 12 11 15 15 C 1.52999 * 60.00190 * 107.47765 * 14 13 12 16 16 N 1.34953 * 107.74386 * 0.22086 * 12 11 10 17 17 H 0.97002 * 126.03226 * 179.77117 * 16 12 11 18 18 N 1.30836 * 125.90024 * 304.95941 * 10 9 7 19 19 H 0.96997 * 119.99874 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46779 * 59.99880 * 9 7 2 21 21 H 1.08998 * 109.47115 * 299.99938 * 9 7 2 22 22 H 1.07999 * 126.04147 * 359.97438 * 11 10 9 23 23 H 1.09002 * 115.55088 * 0.57668 * 13 12 11 24 24 H 1.09001 * 117.49733 * 214.97195 * 14 13 12 25 25 H 1.08995 * 117.49577 * 359.97438 * 14 13 12 26 26 H 1.09004 * 117.50150 * 252.51496 * 15 14 13 27 27 H 1.09004 * 117.51638 * 107.47550 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0138 -2.6148 -0.0010 11 6 4.8996 -3.1716 -0.9293 12 6 5.1034 -4.4647 -0.5867 13 6 5.9876 -5.4470 -1.3108 14 6 6.7115 -6.5001 -0.4695 15 6 5.5327 -6.9072 -1.3557 16 7 4.3686 -4.7186 0.5164 17 1 4.3162 -5.5667 0.9844 18 7 3.6974 -3.5404 0.8679 19 1 -0.4850 0.8400 0.0004 20 1 3.8752 -0.6804 0.8889 21 1 3.8745 -0.6800 -0.8911 22 1 5.3426 -2.6599 -1.7709 23 1 6.5089 -5.0552 -2.1842 24 1 7.7092 -6.8011 -0.7893 25 1 6.5487 -6.4823 0.6081 26 1 4.5940 -7.1573 -0.8612 27 1 5.7544 -7.4758 -2.2589 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259884545.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = 65.685194 kcal Electronic energy + Delta-G solvation = -11216.844718 eV Core-core repulsion = 9168.852171 eV Total energy + Delta-G solvation = -2047.992547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.15809 -37.98246 -35.37746 -33.28916 -30.90505 -30.02658 -25.25557 -24.06702 -23.27889 -21.24251 -20.27268 -18.96099 -18.27908 -16.46249 -16.29821 -15.59915 -15.03797 -14.87220 -14.35683 -13.91603 -13.79737 -13.17858 -12.60122 -12.45652 -12.25117 -12.00727 -11.73866 -11.63193 -11.47120 -11.18513 -10.75546 -9.98206 -9.37484 -8.26668 -6.32079 0.95579 1.40309 1.43639 1.55786 1.92033 2.06894 2.39723 3.02943 3.07691 3.47722 3.83806 4.00413 4.06629 4.28222 4.55018 4.73533 4.88266 4.97862 5.01197 5.03644 5.17846 5.18971 5.38876 5.56495 5.78556 6.29077 6.55109 6.71496 6.94987 7.29892 8.90851 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.082454 B = 0.007851 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.500747 B = 3565.630042 C = 3700.806508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.959 3.041 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.244 1.244 7 C -0.520 4.520 8 H 0.020 0.980 9 C 0.059 3.941 10 C 0.093 3.907 11 C -0.291 4.291 12 C 0.125 3.875 13 C -0.109 4.109 14 C -0.157 4.157 15 C -0.166 4.166 16 N -0.480 5.480 17 H 0.441 0.559 18 N -0.335 5.335 19 H 0.268 0.732 20 H 0.036 0.964 21 H 0.053 0.947 22 H 0.161 0.839 23 H 0.148 0.852 24 H 0.129 0.871 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.117 -10.786 -3.486 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.167 1.167 7 C -0.558 4.558 8 H 0.039 0.961 9 C 0.020 3.980 10 C -0.073 4.073 11 C -0.320 4.320 12 C -0.005 4.005 13 C -0.129 4.129 14 C -0.195 4.195 15 C -0.204 4.204 16 N -0.188 5.188 17 H 0.286 0.714 18 N -0.159 5.159 19 H 0.077 0.923 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.179 0.821 23 H 0.165 0.835 24 H 0.147 0.853 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 15.286 -10.935 -2.439 18.952 hybrid contribution -0.169 0.492 -0.275 0.588 sum 15.117 -10.443 -2.714 18.573 Atomic orbital electron populations 1.70080 1.08501 1.28330 1.52469 1.26066 0.95746 1.03698 0.93794 0.85539 0.79375 0.77313 0.79713 1.18188 1.20896 1.16741 1.21119 0.90822 0.93018 1.50851 0.96128 1.18119 0.94322 0.87342 0.98245 1.22652 0.94722 0.96765 0.93172 1.21395 1.09201 0.95144 1.06288 1.20621 0.95035 0.95399 0.89401 1.20793 1.01494 0.88478 1.02159 1.23174 0.98520 1.00010 0.97765 1.23177 0.98963 0.94582 1.03649 1.46247 1.37100 1.11819 1.23677 0.71415 1.77365 1.20225 0.92656 1.25627 0.92340 0.94574 0.92872 0.82096 0.83452 0.85315 0.89138 0.89564 0.85540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.13 13.96 21.45 0.30 -61.83 15 2 C 0.00 0.20 5.47 84.65 0.46 0.66 15 3 Si 0.96 44.91 27.47 68.60 1.88 46.79 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 6 H -0.24 -10.57 6.54 99.48 0.65 -9.92 15 7 C -0.52 -32.24 9.62 25.60 0.25 -31.99 15 8 H 0.02 1.44 7.98 -2.91 -0.02 1.42 15 9 C 0.06 3.00 4.62 29.10 0.13 3.14 15 10 C 0.09 4.39 6.43 43.10 0.28 4.67 15 11 C -0.29 -11.00 10.64 21.99 0.23 -10.77 15 12 C 0.12 3.90 6.63 41.41 0.27 4.17 15 13 C -0.11 -2.17 6.25 -11.54 -0.07 -2.25 15 14 C -0.16 -2.24 10.22 30.59 0.31 -1.93 15 15 C -0.17 -2.56 10.22 30.60 0.31 -2.25 15 16 N -0.48 -16.61 7.31 -48.00 -0.35 -16.97 15 17 H 0.44 11.87 8.96 -213.32 -1.91 9.96 15 18 N -0.34 -15.83 12.66 -47.39 -0.60 -16.43 15 19 H 0.27 16.10 8.31 -92.71 -0.77 15.33 15 20 H 0.04 1.82 7.20 -2.39 -0.02 1.81 15 21 H 0.05 2.48 7.55 -2.39 -0.02 2.46 15 22 H 0.16 5.17 8.06 -2.91 -0.02 5.15 15 23 H 0.15 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.13 1.23 8.14 -2.39 -0.02 1.21 15 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 15 26 H 0.09 1.48 8.14 -2.39 -0.02 1.47 15 27 H 0.13 1.40 8.14 -2.38 -0.02 1.38 15 Total: -1.00 -76.49 241.03 2.62 -73.87 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -0.80 Total: 11.11 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 2.18 Total: -36.54 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -0.65 Total: -95.23 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Total: -76.49 2.62 -73.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259884545.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.559 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds