Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47413 * 270.00037 * 3 2 1 5 5 H 1.48506 * 109.47585 * 29.99977 * 3 2 1 6 6 H 1.48503 * 109.47386 * 150.00154 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00242 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47236 * 180.02562 * 9 7 2 11 11 N 1.30224 * 125.77588 * 270.02460 * 10 9 7 12 12 O 1.41599 * 108.72749 * 180.17024 * 11 10 9 13 13 C 1.34698 * 107.99463 * 359.68147 * 12 11 10 14 14 C 1.41235 * 146.06939 * 179.97438 * 13 12 11 15 15 C 1.34517 * 107.11568 * 180.33863 * 14 13 12 16 16 O 1.34300 * 109.28662 * 359.97438 * 15 14 13 17 17 C 1.35047 * 109.62287 * 0.02562 * 16 15 14 18 18 H 0.97002 * 120.00397 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.46923 * 60.00051 * 9 7 2 20 20 H 1.09006 * 109.47003 * 300.00305 * 9 7 2 21 21 H 1.07995 * 126.43640 * 0.35475 * 14 13 12 22 22 H 1.08008 * 125.35248 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 7 4.2676 -3.3326 1.0567 12 8 4.7226 -4.6076 0.6416 13 6 4.7256 -4.6303 -0.7051 14 6 4.9943 -5.3920 -1.8637 15 6 4.7183 -4.6111 -2.9237 16 8 4.2943 -3.4119 -2.4928 17 6 4.2876 -3.3915 -1.1425 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6797 0.8894 20 1 3.8745 -0.6808 -0.8905 21 1 5.3535 -6.4100 -1.8930 22 1 4.8207 -4.9030 -3.9585 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259894995.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = 69.828592 kcal Electronic energy + Delta-G solvation = -11414.313850 eV Core-core repulsion = 9132.949217 eV Total energy + Delta-G solvation = -2281.364633 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.90864 -39.88588 -34.50412 -32.52612 -32.15017 -29.06897 -28.74048 -23.51653 -22.15925 -21.67754 -19.77670 -17.10081 -17.07510 -16.71389 -16.36500 -14.52406 -14.43791 -14.24849 -13.16940 -12.96544 -12.70391 -12.24432 -11.61359 -11.27128 -11.20409 -10.68432 -10.38847 -9.93546 -9.55475 -9.03065 -8.70746 -8.37869 -6.19374 -4.22255 1.16644 2.33908 2.45444 2.84223 3.22484 3.26357 3.31509 3.32085 4.30713 4.50452 4.83556 5.04076 5.18625 5.22023 5.71081 5.77323 6.14496 6.27390 6.69813 6.81560 7.05993 7.43044 7.70469 8.30126 8.81039 9.36471 10.93003 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.054486 B = 0.010769 C = 0.010131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.774196 B = 2599.336856 C = 2763.002710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.523 4.523 8 H 0.076 0.924 9 C 0.043 3.957 10 C 0.205 3.795 11 N -0.297 5.297 12 O -0.075 6.075 13 C -0.003 4.003 14 C -0.201 4.201 15 C 0.028 3.972 16 O -0.143 6.143 17 C -0.104 4.104 18 H 0.268 0.732 19 H 0.050 0.950 20 H 0.046 0.954 21 H 0.164 0.836 22 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 -6.467 -6.174 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.562 4.562 8 H 0.094 0.906 9 C 0.005 3.995 10 C 0.031 3.969 11 N -0.048 5.048 12 O -0.083 6.083 13 C -0.063 4.063 14 C -0.222 4.222 15 C -0.043 4.043 16 O -0.038 6.038 17 C -0.157 4.157 18 H 0.078 0.922 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.181 0.819 22 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.677 -6.237 -4.985 12.546 hybrid contribution 0.272 0.630 -0.801 1.055 sum 9.949 -5.607 -5.786 12.802 Atomic orbital electron populations 1.69873 1.06242 1.27376 1.49289 1.24895 0.94821 0.98993 0.93924 0.86799 0.80504 0.83384 0.78903 1.19783 1.20767 1.18690 1.20668 0.87010 0.95318 1.53180 0.90580 1.18613 0.98322 0.83176 0.99388 1.23018 0.90029 0.98801 0.85098 1.80530 1.20749 0.87610 1.15881 1.89094 1.74004 1.30890 1.14352 1.21198 1.01809 0.96130 0.87128 1.20463 1.12572 1.02115 0.87012 1.24361 0.98239 0.81813 0.99906 1.83986 1.67522 1.33438 1.18872 1.21393 1.14541 0.96375 0.83367 0.92201 0.93148 0.93554 0.81878 0.76431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.96 55.43 0.77 -26.15 14 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 14 3 Si 0.88 20.77 27.47 -169.99 -4.67 16.10 14 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 14 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 14 7 C -0.52 -14.97 9.65 -34.44 -0.33 -15.30 14 8 H 0.08 2.40 7.98 -52.48 -0.42 1.99 14 9 C 0.04 1.06 4.61 -29.04 -0.13 0.92 14 10 C 0.20 4.75 6.41 -82.29 -0.53 4.22 14 11 N -0.30 -6.90 12.90 33.77 0.44 -6.46 14 12 O -0.08 -1.59 12.15 7.91 0.10 -1.50 14 13 C 0.00 -0.06 8.36 -38.36 -0.32 -0.38 14 14 C -0.20 -2.71 10.88 -39.76 -0.43 -3.15 14 15 C 0.03 0.34 12.03 29.42 0.35 0.69 14 16 O -0.14 -2.54 10.67 3.63 0.04 -2.51 14 17 C -0.10 -2.18 8.15 -38.51 -0.31 -2.49 14 18 H 0.27 7.50 8.31 -40.82 -0.34 7.16 14 19 H 0.05 1.20 7.20 -51.93 -0.37 0.83 14 20 H 0.05 1.06 7.57 -51.93 -0.39 0.67 14 21 H 0.16 1.57 8.06 -52.49 -0.42 1.15 14 22 H 0.22 1.36 8.06 -52.48 -0.42 0.94 14 LS Contribution 210.63 15.07 3.17 3.17 Total: -1.00 -32.44 210.63 -3.15 -35.60 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: -1.20 Total: -4.88 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -1.80 Total: -13.38 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: 1.21 Total: -32.61 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.13 Total: -4.00 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -32.44 -3.15 -35.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894995.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.425 kcal (2) G-P(sol) polarization free energy of solvation -32.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds