Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 119.99959 * 2 1 4 4 H 1.48501 * 109.47413 * 270.00037 * 3 2 1 5 5 H 1.48506 * 109.47585 * 29.99977 * 3 2 1 6 6 H 1.48503 * 109.47386 * 150.00154 * 3 2 1 7 7 C 1.37874 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00242 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00209 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47236 * 180.02562 * 9 7 2 11 11 N 1.30224 * 125.77588 * 270.02460 * 10 9 7 12 12 O 1.41599 * 108.72749 * 180.17024 * 11 10 9 13 13 C 1.34698 * 107.99463 * 359.68147 * 12 11 10 14 14 C 1.41235 * 146.06939 * 179.97438 * 13 12 11 15 15 C 1.34517 * 107.11568 * 180.33863 * 14 13 12 16 16 O 1.34300 * 109.28662 * 359.97438 * 15 14 13 17 17 C 1.35047 * 109.62287 * 0.02562 * 16 15 14 18 18 H 0.97002 * 120.00397 * 359.97438 * 1 2 3 19 19 H 1.08993 * 109.46923 * 60.00051 * 9 7 2 20 20 H 1.09006 * 109.47003 * 300.00305 * 9 7 2 21 21 H 1.07995 * 126.43640 * 0.35475 * 14 13 12 22 22 H 1.08008 * 125.35248 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 0.0001 11 7 4.2676 -3.3326 1.0567 12 8 4.7226 -4.6076 0.6416 13 6 4.7256 -4.6303 -0.7051 14 6 4.9943 -5.3920 -1.8637 15 6 4.7183 -4.6111 -2.9237 16 8 4.2943 -3.4119 -2.4928 17 6 4.2876 -3.3915 -1.1425 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6797 0.8894 20 1 3.8745 -0.6808 -0.8905 21 1 5.3535 -6.4100 -1.8930 22 1 4.8207 -4.9030 -3.9585 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259894995.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = 45.950849 kcal Electronic energy + Delta-G solvation = -11415.349266 eV Core-core repulsion = 9132.949217 eV Total energy + Delta-G solvation = -2282.400049 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.28121 -41.38506 -36.32684 -34.51187 -33.47612 -31.05589 -30.12074 -25.52393 -23.49195 -23.12676 -21.33155 -19.20128 -18.54142 -18.13074 -17.88562 -16.38064 -15.91673 -15.61726 -15.05065 -14.53840 -14.18118 -14.02116 -13.32893 -13.00338 -12.85510 -12.48725 -12.18302 -11.81167 -11.53253 -10.87249 -10.49053 -9.75844 -8.39032 -6.49819 -0.24677 0.94228 1.17242 1.33665 1.36873 1.39712 1.51092 1.94012 2.30561 2.93583 3.09459 3.46426 3.79033 4.07064 4.29004 4.53549 4.76003 4.77609 4.89977 5.21551 5.33159 5.78325 6.06162 6.09116 6.52233 7.13522 8.77428 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.054486 B = 0.010769 C = 0.010131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.774196 B = 2599.336856 C = 2763.002710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.018 3.982 3 Si 0.955 3.045 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.023 0.977 9 C 0.050 3.950 10 C 0.185 3.815 11 N -0.332 5.332 12 O -0.080 6.080 13 C -0.004 4.004 14 C -0.205 4.205 15 C 0.068 3.932 16 O -0.162 6.162 17 C -0.152 4.152 18 H 0.274 0.726 19 H 0.056 0.944 20 H 0.064 0.936 21 H 0.208 0.792 22 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.843 -6.684 -8.168 15.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.042 0.958 9 C 0.012 3.988 10 C 0.012 3.988 11 N -0.083 5.083 12 O -0.090 6.090 13 C -0.063 4.063 14 C -0.225 4.225 15 C -0.002 4.002 16 O -0.058 6.058 17 C -0.204 4.204 18 H 0.083 0.917 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.225 0.775 22 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 11.646 -6.462 -6.971 15.033 hybrid contribution -0.361 0.483 -0.319 0.682 sum 11.285 -5.979 -7.290 14.705 Atomic orbital electron populations 1.70025 1.08400 1.28939 1.50449 1.25948 0.95748 1.03496 0.92899 0.85597 0.79550 0.77261 0.80010 1.17973 1.20204 1.16599 1.20784 0.89412 0.93646 1.53733 0.95808 1.18434 0.95374 0.84817 1.00221 1.22856 0.90589 0.98544 0.86776 1.80421 1.22352 0.88733 1.16759 1.89012 1.73942 1.29881 1.16141 1.22118 1.00702 0.96725 0.86764 1.21146 1.12854 1.04008 0.84514 1.25818 0.93082 0.78993 1.02294 1.83990 1.68372 1.36238 1.17212 1.21196 1.17604 0.96975 0.84617 0.91718 0.92638 0.91781 0.77462 0.69844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.96 21.45 0.30 -58.22 14 2 C 0.02 1.05 5.47 84.65 0.46 1.51 14 3 Si 0.95 42.59 27.47 68.60 1.88 44.47 14 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 14 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 14 6 H -0.24 -9.99 6.54 99.48 0.65 -9.34 14 7 C -0.54 -32.00 9.65 25.60 0.25 -31.75 14 8 H 0.02 1.60 7.98 -2.91 -0.02 1.58 14 9 C 0.05 2.47 4.61 29.10 0.13 2.60 14 10 C 0.18 8.83 6.41 43.43 0.28 9.11 14 11 N -0.33 -15.99 12.90 -47.07 -0.61 -16.60 14 12 O -0.08 -3.44 12.15 30.57 0.37 -3.07 14 13 C 0.00 -0.14 8.36 23.06 0.19 0.06 14 14 C -0.21 -4.70 10.88 22.15 0.24 -4.46 14 15 C 0.07 1.33 12.03 66.97 0.81 2.13 14 16 O -0.16 -5.42 10.67 -9.92 -0.11 -5.53 14 17 C -0.15 -6.31 8.15 22.96 0.19 -6.12 14 18 H 0.27 15.65 8.31 -92.71 -0.77 14.88 14 19 H 0.06 2.65 7.20 -2.39 -0.02 2.63 14 20 H 0.06 2.91 7.57 -2.38 -0.02 2.89 14 21 H 0.21 2.80 8.06 -2.91 -0.02 2.78 14 22 H 0.29 1.37 8.06 -2.91 -0.02 1.35 14 Total: -1.00 -75.97 210.63 5.58 -70.39 By element: Atomic # 1 Polarization: -5.71 SS G_CDS: 1.19 Total: -4.52 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 2.55 Total: -26.92 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -0.31 Total: -74.81 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.27 Total: -8.60 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Total: -75.97 5.58 -70.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259894995.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.342 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds