Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30847 * 1 3 3 Si 1.86799 * 120.00406 * 2 1 4 4 H 1.48499 * 109.47087 * 270.00587 * 3 2 1 5 5 H 1.48503 * 109.46941 * 29.99878 * 3 2 1 6 6 H 1.48494 * 109.47487 * 150.00278 * 3 2 1 7 7 C 1.40074 * 119.99823 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.40060 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.39620 * 127.06270 * 0.15237 * 9 7 2 11 11 N 1.33019 * 107.46329 * 180.25631 * 10 9 7 12 12 C 1.31018 * 109.98030 * 359.75446 * 11 10 9 13 13 C 1.50699 * 125.17685 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47519 * 305.02902 * 13 12 11 15 15 C 1.53006 * 117.49786 * 243.74740 * 14 13 12 16 16 C 1.53000 * 117.50079 * 175.08619 * 14 13 12 17 17 N 1.35078 * 109.64619 * 0.02562 * 12 11 10 18 18 H 0.97001 * 126.48271 * 179.97438 * 17 12 11 19 19 H 0.97006 * 120.00089 * 359.97438 * 1 2 3 20 20 H 1.07997 * 126.26750 * 0.02562 * 10 9 7 21 21 H 1.08998 * 109.47082 * 65.03095 * 13 12 11 22 22 H 1.09003 * 109.47319 * 185.02396 * 13 12 11 23 23 H 1.09000 * 115.55287 * 29.41151 * 14 13 12 24 24 H 1.09004 * 117.49654 * 359.97438 * 15 14 13 25 25 H 1.08997 * 117.49764 * 145.01933 * 15 14 13 26 26 H 1.08998 * 117.49846 * 214.97638 * 16 14 13 27 27 H 1.08997 * 117.49659 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5401 1.4401 0.6999 7 6 2.0088 -1.2131 -0.0005 8 1 3.0888 -1.2131 -0.0010 9 6 1.3084 -2.4260 -0.0005 10 6 -0.0772 -2.5976 -0.0030 11 7 -0.3174 -3.9059 0.0037 12 6 0.8128 -4.5686 0.0048 13 6 0.9387 -6.0703 0.0123 14 6 0.1586 -6.6417 1.1980 15 6 0.9544 -7.3739 2.2804 16 6 0.0670 -8.1644 1.3156 17 7 1.8480 -3.7009 -0.0005 18 1 2.7910 -3.9282 -0.0006 19 1 -0.4850 0.8401 0.0004 20 1 -0.8182 -1.8120 -0.0057 21 1 0.5349 -6.4734 -0.9164 22 1 1.9894 -6.3464 0.1017 23 1 -0.7061 -6.0594 1.5163 24 1 2.0337 -7.4489 2.1475 25 1 0.6130 -7.2736 3.3106 26 1 -0.8579 -8.5838 1.7116 27 1 0.5621 -8.7591 0.5480 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259901896.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = 38.163384 kcal Electronic energy + Delta-G solvation = -11331.604872 eV Core-core repulsion = 9282.418890 eV Total energy + Delta-G solvation = -2049.185983 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79819 -38.22913 -35.57035 -32.83816 -31.69571 -29.12740 -25.61136 -23.17076 -22.03565 -21.84086 -20.73408 -19.17425 -17.68976 -16.65152 -15.94812 -15.49416 -14.98719 -14.47076 -14.14660 -14.04245 -13.43317 -12.90326 -12.73681 -12.64709 -12.33972 -12.23689 -11.94450 -11.29224 -11.10666 -10.74529 -10.31936 -10.20848 -8.89980 -8.51909 -6.26290 1.30941 1.41555 1.56934 1.87339 2.21882 2.72346 2.93001 3.03847 3.38321 3.93303 4.02557 4.12674 4.33647 4.50050 4.82448 4.91650 4.98492 5.08548 5.15875 5.21307 5.32086 5.45871 5.70281 5.74079 5.99180 6.54261 6.86473 6.97945 7.42729 8.00608 8.45958 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.091236 B = 0.007938 C = 0.007680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 306.821150 B = 3526.603310 C = 3645.129755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.024 3.976 3 Si 1.007 2.993 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.478 4.478 8 H 0.082 0.918 9 C 0.151 3.849 10 C -0.180 4.180 11 N -0.513 5.513 12 C 0.100 3.900 13 C 0.025 3.975 14 C -0.161 4.161 15 C -0.179 4.179 16 C -0.160 4.160 17 N -0.602 5.602 18 H 0.412 0.588 19 H 0.285 0.715 20 H 0.161 0.839 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.104 0.896 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.129 -7.711 1.641 9.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.189 4.189 3 Si 0.827 3.173 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.513 4.513 8 H 0.100 0.900 9 C 0.038 3.962 10 C -0.326 4.326 11 N -0.233 5.233 12 C -0.157 4.157 13 C -0.014 4.014 14 C -0.181 4.181 15 C -0.216 4.216 16 C -0.197 4.197 17 N -0.214 5.214 18 H 0.249 0.751 19 H 0.096 0.904 20 H 0.178 0.822 21 H 0.098 0.902 22 H 0.107 0.893 23 H 0.095 0.905 24 H 0.122 0.878 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.041 -7.948 1.641 9.066 hybrid contribution 1.120 1.253 0.014 1.681 sum 5.161 -6.695 1.655 8.614 Atomic orbital electron populations 1.69745 1.09091 1.29880 1.37704 1.26772 0.95701 1.04485 0.91944 0.84832 0.78392 0.74794 0.79285 1.18797 1.19429 1.18020 1.18772 0.94500 0.89167 1.48874 0.90029 1.19301 0.93424 0.84324 0.99184 1.23205 0.94781 0.91456 1.23197 1.69332 1.28222 1.06573 1.19207 1.22978 0.83012 0.94304 1.15449 1.19269 1.00375 0.83845 0.97891 1.22106 1.01821 0.95163 0.98973 1.23128 0.98689 1.04222 0.95566 1.23072 1.02026 0.92183 1.02399 1.42910 1.08601 1.06074 1.63819 0.75100 0.90407 0.82211 0.90243 0.89303 0.90507 0.87756 0.89045 0.88112 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.03 10.35 21.86 0.23 -45.80 15 2 C 0.02 1.24 5.50 85.29 0.47 1.71 15 3 Si 1.01 38.81 29.56 68.60 2.03 40.84 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 7 C -0.48 -26.10 9.45 23.16 0.22 -25.88 15 8 H 0.08 4.09 7.85 -2.91 -0.02 4.07 15 9 C 0.15 8.60 6.96 38.88 0.27 8.87 15 10 C -0.18 -10.97 10.88 84.85 0.92 -10.04 15 11 N -0.51 -28.84 10.95 -184.80 -2.02 -30.86 15 12 C 0.10 4.75 7.38 137.97 1.02 5.77 15 13 C 0.03 0.86 6.12 29.85 0.18 1.04 15 14 C -0.16 -5.20 5.71 -10.79 -0.06 -5.26 15 15 C -0.18 -4.52 10.18 30.62 0.31 -4.21 15 16 C -0.16 -3.70 10.25 30.62 0.31 -3.38 15 17 N -0.60 -28.70 6.23 -178.77 -1.11 -29.82 15 18 H 0.41 16.12 8.96 -92.71 -0.83 15.29 15 19 H 0.29 14.17 8.30 -92.70 -0.77 13.40 15 20 H 0.16 10.30 5.78 -2.91 -0.02 10.29 15 21 H 0.08 2.58 8.14 -2.39 -0.02 2.56 15 22 H 0.09 2.48 7.88 -2.39 -0.02 2.46 15 23 H 0.08 3.04 7.90 -2.39 -0.02 3.02 15 24 H 0.10 2.32 8.03 -2.39 -0.02 2.30 15 25 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 27 H 0.11 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -67.37 238.10 3.11 -64.26 By element: Atomic # 1 Polarization: 32.42 SS G_CDS: 0.35 Total: 32.77 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.65 Total: -31.39 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -2.91 Total: -106.48 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -67.37 3.11 -64.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259901896.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.425 kcal (2) G-P(sol) polarization free energy of solvation -67.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds