Wall clock time and date at job start Mon Mar 30 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38604 * 120.07835 * 2 1 4 4 C 1.38885 * 117.97134 * 179.97438 * 3 2 1 5 5 C 1.38619 * 117.96585 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.07276 * 179.97438 * 5 4 3 7 7 C 1.53007 * 109.47212 * 124.99796 * 6 5 4 8 8 C 1.50693 * 109.47124 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00257 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99927 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00004 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00087 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46974 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46836 * 120.00165 * 12 10 8 15 15 H 1.48496 * 109.47249 * 239.99929 * 12 10 8 16 16 N 1.31929 * 119.84383 * 359.97438 * 5 4 3 17 17 N 1.28344 * 122.18738 * 0.02562 * 16 5 4 18 18 H 1.09000 * 109.47104 * 90.00110 * 1 2 3 19 19 H 1.09001 * 109.47210 * 210.00250 * 1 2 3 20 20 H 1.09010 * 109.46818 * 329.99984 * 1 2 3 21 21 H 1.07997 * 121.01707 * 0.02562 * 3 2 1 22 22 H 1.07994 * 121.01675 * 179.72435 * 4 3 2 23 23 H 1.09008 * 109.46850 * 244.99143 * 6 5 4 24 24 H 1.08997 * 109.47705 * 4.99342 * 6 5 4 25 25 H 1.08996 * 109.46794 * 299.99794 * 7 6 5 26 26 H 1.08998 * 109.46710 * 59.99501 * 7 6 5 27 27 H 0.96998 * 120.00042 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2017 1.1994 0.0000 4 6 3.5896 1.1483 0.0005 5 6 4.1942 -0.0991 0.0005 6 6 5.6970 -0.2098 0.0005 7 6 6.1449 -1.0724 1.1822 8 6 7.6477 -1.1837 1.1818 9 1 8.2257 -0.6883 0.4157 10 6 8.2850 -1.9170 2.1602 11 7 7.5812 -2.5198 3.0934 12 14 10.1479 -2.0543 2.1602 13 1 10.7006 -1.2898 1.0133 14 1 10.6851 -1.5002 3.4289 15 1 10.5391 -3.4817 2.0387 16 7 3.4508 -1.1890 0.0005 17 7 2.1682 -1.1417 0.0000 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3634 -0.8900 0.5139 20 1 -0.3633 0.8901 0.5139 21 1 1.6797 2.1448 0.0004 22 1 4.1797 2.0528 -0.0039 23 1 6.0275 -0.6698 -0.9309 24 1 6.1347 0.7844 0.0900 25 1 5.8145 -0.6125 2.1135 26 1 5.7072 -2.0667 1.0926 27 1 8.0295 -3.0360 3.7815 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908373.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:28 Heat of formation + Delta-G solvation = 34.301498 kcal Electronic energy + Delta-G solvation = -11129.283004 eV Core-core repulsion = 9079.929558 eV Total energy + Delta-G solvation = -2049.353446 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68007 -34.89201 -33.30992 -32.72355 -30.56848 -27.72539 -25.44151 -23.77787 -22.35056 -20.62149 -17.09413 -16.43009 -15.67502 -14.92885 -14.84561 -14.38331 -13.27732 -13.05573 -13.00274 -12.59383 -12.31107 -12.10380 -11.24354 -10.96046 -10.74173 -10.42539 -10.09901 -9.92767 -9.66498 -9.14906 -9.10439 -8.84907 -8.32160 -5.97026 -4.00554 1.12513 1.27900 3.33086 3.40314 3.43965 3.89642 4.32293 4.47559 4.71008 4.86993 4.92016 5.22138 5.38631 5.42328 5.50603 5.56450 5.89422 6.01874 6.16045 6.44399 6.51273 6.65194 6.97364 7.69034 7.85480 8.03918 8.40535 9.06255 9.18238 9.63132 11.14200 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.088522 B = 0.007178 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.228887 B = 3899.986239 C = 4066.528168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.040 3.960 3 C -0.124 4.124 4 C -0.121 4.121 5 C 0.088 3.912 6 C -0.065 4.065 7 C 0.029 3.971 8 C -0.523 4.523 9 H 0.057 0.943 10 C 0.057 3.943 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.284 1.284 16 N -0.230 5.230 17 N -0.244 5.244 18 H 0.077 0.923 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.142 0.858 22 H 0.147 0.853 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.013 0.987 26 H 0.032 0.968 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.521 8.641 -5.885 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.153 4.153 4 C -0.150 4.150 5 C -0.056 4.056 6 C -0.104 4.104 7 C -0.008 4.008 8 C -0.561 4.561 9 H 0.075 0.925 10 C -0.144 4.144 11 N -0.531 5.531 12 Si 0.721 3.279 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 N -0.072 5.072 17 N -0.087 5.087 18 H 0.095 0.905 19 H 0.097 0.903 20 H 0.092 0.908 21 H 0.160 0.840 22 H 0.165 0.835 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.031 0.969 26 H 0.051 0.949 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.568 6.860 -5.731 13.842 hybrid contribution 1.084 1.562 0.178 1.909 sum -9.484 8.422 -5.552 13.846 Atomic orbital electron populations 1.20585 0.88124 1.03555 1.02994 1.22805 0.98749 0.90984 0.97936 1.22185 0.94771 0.99443 0.98854 1.22396 0.95050 0.99609 0.97924 1.23478 1.00381 0.89743 0.91967 1.20812 0.84257 1.02301 1.03030 1.19071 0.95945 0.95102 0.90700 1.21245 0.91767 1.31483 1.11643 0.92454 1.25027 0.98299 0.95543 0.95546 1.69991 1.35239 1.33061 1.14802 0.86526 0.85725 0.77838 0.77834 1.19715 1.21073 1.20965 1.73042 0.98406 1.27110 1.08659 1.72997 1.02302 1.24744 1.08644 0.90466 0.90254 0.90802 0.83982 0.83546 0.90493 0.91206 0.96868 0.94942 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.20 36.01 0.37 -0.58 15 2 C 0.04 0.59 6.87 -82.41 -0.57 0.03 15 3 C -0.12 -1.62 9.88 -39.21 -0.39 -2.01 15 4 C -0.12 -1.82 9.82 -39.20 -0.39 -2.20 15 5 C 0.09 1.71 6.25 -82.41 -0.52 1.20 15 6 C -0.07 -1.36 5.57 -27.88 -0.16 -1.52 15 7 C 0.03 0.78 4.84 -27.88 -0.13 0.65 15 8 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 15 9 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 11 N -0.89 -27.47 13.29 55.43 0.74 -26.74 15 12 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 15 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 16 N -0.23 -4.97 11.07 33.59 0.37 -4.60 15 17 N -0.24 -4.71 11.43 33.59 0.38 -4.32 15 18 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 0.56 8.09 -51.92 -0.42 0.14 15 21 H 0.14 1.26 8.06 -52.49 -0.42 0.84 15 22 H 0.15 1.74 8.00 -52.49 -0.42 1.32 15 23 H 0.08 1.58 8.14 -51.92 -0.42 1.16 15 24 H 0.07 1.30 7.92 -51.93 -0.41 0.89 15 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 15 26 H 0.03 0.95 7.97 -51.93 -0.41 0.54 15 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 243.28 15.07 3.67 3.67 Total: -1.00 -33.14 243.28 -5.37 -38.51 By element: Atomic # 1 Polarization: -1.88 SS G_CDS: -3.32 Total: -5.20 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.19 Total: -18.11 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 1.49 Total: -35.66 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -33.14 -5.37 -38.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908373.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.808 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds