Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31327 * 1 3 3 Si 1.86800 * 119.99577 * 2 1 4 4 H 1.48502 * 109.47011 * 239.99853 * 3 2 1 5 5 H 1.48502 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47190 * 119.99561 * 3 2 1 7 7 C 1.39102 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99653 * 180.02562 * 7 2 1 9 9 N 1.36791 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99566 * 179.97438 * 9 7 2 11 11 O 1.21567 * 120.00065 * 359.97438 * 10 9 7 12 12 C 1.47996 * 119.99720 * 179.97438 * 10 9 7 13 13 C 1.39817 * 120.18715 * 180.27204 * 12 10 9 14 14 C 1.38777 * 117.88912 * 180.24339 * 13 12 10 15 15 C 1.38613 * 118.07773 * 359.51424 * 14 13 12 16 16 N 1.32167 * 120.08182 * 0.23584 * 15 14 13 17 17 N 1.28340 * 122.31102 * 0.02562 * 16 15 14 18 18 H 0.96992 * 120.00413 * 0.02562 * 1 2 3 19 19 H 0.96998 * 120.00224 * 359.97438 * 9 7 2 20 20 H 1.07997 * 121.05825 * 0.02562 * 13 12 10 21 21 H 1.08002 * 120.96380 * 179.79693 * 14 13 12 22 22 H 1.07995 * 119.95849 * 180.24979 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2472 1.6178 0.0000 4 1 3.1009 1.6965 -1.2125 5 1 1.2821 2.7465 -0.0006 6 1 3.1008 1.6966 1.2125 7 6 2.0088 -1.2046 0.0005 8 1 3.0889 -1.2045 0.0010 9 7 1.3249 -2.3893 0.0005 10 6 1.9989 -3.5564 0.0005 11 8 3.2146 -3.5563 0.0001 12 6 1.2590 -4.8382 0.0011 13 6 1.9542 -6.0512 0.0069 14 6 1.2128 -7.2243 0.0019 15 6 -0.1696 -7.1224 0.0020 16 7 -0.7462 -5.9332 0.0020 17 7 -0.0695 -4.8427 0.0014 18 1 -0.4850 0.8399 -0.0004 19 1 0.3549 -2.3893 0.0005 20 1 3.0339 -6.0746 0.0113 21 1 1.6987 -8.1888 0.0027 22 1 -0.7762 -8.0159 0.0023 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259913899.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -6.600919 kcal Electronic energy + Delta-G solvation = -11207.722553 eV Core-core repulsion = 8955.336439 eV Total energy + Delta-G solvation = -2252.386114 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.059 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.96712 -39.86864 -36.24282 -34.14307 -33.78171 -33.05791 -27.76391 -25.76635 -25.30946 -21.95735 -20.23125 -18.97899 -17.98277 -17.39385 -16.85294 -16.30491 -15.82417 -15.44732 -15.01357 -14.57777 -14.04119 -13.60851 -12.98443 -12.59339 -12.32816 -12.12906 -11.65956 -11.21061 -11.02374 -10.74015 -10.65288 -10.21455 -8.62707 -6.08760 -0.41006 -0.13909 1.39756 1.40605 1.54126 1.89057 2.21533 2.69141 2.73568 3.18925 3.21005 3.62780 3.81706 4.00129 4.15849 4.35854 4.85261 5.01889 5.25840 5.30468 5.80058 6.37392 6.89749 7.29121 7.65230 7.86903 8.53332 Molecular weight = 193.06amu Principal moments of inertia in cm(-1) A = 0.076844 B = 0.009247 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 364.289352 B = 3027.195362 C = 3381.641704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.009 4.009 3 Si 1.010 2.990 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.265 1.265 7 C -0.343 4.343 8 H 0.095 0.905 9 N -0.527 5.527 10 C 0.460 3.540 11 O -0.627 6.627 12 C 0.032 3.968 13 C -0.091 4.091 14 C -0.092 4.092 15 C 0.042 3.958 16 N -0.277 5.277 17 N -0.263 5.263 18 H 0.287 0.713 19 H 0.403 0.597 20 H 0.163 0.837 21 H 0.210 0.790 22 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -11.363 0.013 11.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.212 4.212 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.113 0.887 9 N -0.159 5.159 10 C 0.247 3.753 11 O -0.516 6.516 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.120 4.120 15 C -0.122 4.122 16 N -0.119 5.119 17 N -0.109 5.109 18 H 0.097 0.903 19 H 0.238 0.762 20 H 0.181 0.819 21 H 0.227 0.773 22 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.624 -10.272 0.013 10.291 hybrid contribution 1.032 0.099 -0.001 1.036 sum 0.407 -10.172 0.013 10.180 Atomic orbital electron populations 1.69690 1.07577 1.30580 1.46021 1.26473 0.96597 1.03416 0.94716 0.84759 0.77712 0.74925 0.79547 1.18940 1.19027 1.18930 1.19987 0.93554 0.83413 1.50309 0.88676 1.41970 1.10228 1.04866 1.58801 1.17708 0.86874 0.83438 0.87298 1.90553 1.13771 1.87043 1.60226 1.22920 0.92756 0.96231 0.99563 1.22603 1.03562 0.91317 0.94582 1.22954 0.94390 1.00470 0.94229 1.25218 0.95225 0.98374 0.93376 1.72974 1.32232 0.96469 1.10223 1.73247 1.05868 1.22197 1.09612 0.90321 0.76219 0.81928 0.77305 0.76008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.99 13.05 21.69 0.28 -49.71 14 2 C -0.01 -0.48 5.50 84.98 0.47 -0.02 14 3 Si 1.01 42.11 29.55 68.60 2.03 44.14 14 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 14 5 H -0.27 -10.36 7.11 99.48 0.71 -9.66 14 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 14 7 C -0.34 -20.03 9.68 84.13 0.81 -19.21 14 8 H 0.10 5.70 7.15 -2.91 -0.02 5.68 14 9 N -0.53 -29.92 5.27 -309.51 -1.63 -31.55 14 10 C 0.46 24.54 7.76 86.83 0.67 25.22 14 11 O -0.63 -36.01 15.97 -3.93 -0.06 -36.07 14 12 C 0.03 1.37 6.83 41.96 0.29 1.65 14 13 C -0.09 -2.90 9.73 22.78 0.22 -2.68 14 14 C -0.09 -1.88 10.20 22.49 0.23 -1.65 14 15 C 0.04 0.96 11.31 84.73 0.96 1.91 14 16 N -0.28 -9.73 11.51 -57.13 -0.66 -10.39 14 17 N -0.26 -11.37 10.75 -48.51 -0.52 -11.89 14 18 H 0.29 14.62 8.31 -92.71 -0.77 13.85 14 19 H 0.40 22.91 7.25 -92.71 -0.67 22.24 14 20 H 0.16 4.88 7.72 -2.91 -0.02 4.86 14 21 H 0.21 1.79 8.06 -2.91 -0.02 1.76 14 22 H 0.22 2.50 8.06 -2.91 -0.02 2.48 14 Total: -1.00 -72.83 214.96 3.68 -69.15 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.59 Total: 21.09 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 3.65 Total: 5.23 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -2.53 Total: -103.54 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.06 Total: -36.07 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -72.83 3.68 -69.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259913899.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.547 kcal (2) G-P(sol) polarization free energy of solvation -72.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds