Wall clock time and date at job start Mon Mar 30 2020 02:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34893 * 126.02895 * 2 1 4 4 C 1.35455 * 107.77240 * 180.22604 * 3 2 1 5 5 C 1.39860 * 107.91216 * 359.64048 * 4 3 2 6 6 N 1.31035 * 108.12873 * 0.36158 * 5 4 3 7 7 C 1.51328 * 109.50813 * 180.22163 * 5 4 3 8 8 H 1.09005 * 110.28919 * 258.41211 * 7 5 4 9 9 C 1.50696 * 110.29019 * 136.38918 * 7 5 4 10 10 H 1.08005 * 119.99851 * 241.45036 * 9 7 5 11 11 C 1.37879 * 120.00537 * 61.45159 * 9 7 5 12 12 N 1.31510 * 119.99466 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99933 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47395 * 59.99791 * 13 11 9 15 15 H 1.48500 * 109.46875 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47222 * 299.99633 * 13 11 9 17 17 C 1.54331 * 105.22541 * 17.44847 * 7 5 4 18 18 C 1.51287 * 142.52851 * 180.53647 * 4 3 2 19 19 H 1.09009 * 109.46979 * 90.00370 * 1 2 3 20 20 H 1.09003 * 109.47100 * 209.99920 * 1 2 3 21 21 H 1.08996 * 109.47625 * 330.00526 * 1 2 3 22 22 H 1.08002 * 126.11099 * 359.95531 * 3 2 1 23 23 H 0.97005 * 119.99124 * 180.02562 * 12 11 9 24 24 H 1.09003 * 110.76904 * 91.76006 * 17 7 5 25 25 H 1.09000 * 110.76711 * 214.98511 * 17 7 5 26 26 H 1.08996 * 110.42921 * 43.17825 * 18 4 3 27 27 H 1.09003 * 110.18438 * 281.12498 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2584 1.0909 0.0000 4 6 3.5448 0.6666 -0.0051 5 6 3.5364 -0.7320 0.0000 6 7 2.2887 -1.1323 0.0001 7 6 4.9597 -1.2459 0.0001 8 1 5.2442 -1.5711 -1.0007 9 6 5.1050 -2.3823 0.9790 10 1 5.7826 -2.2916 1.8151 11 6 4.3729 -3.5381 0.8074 12 7 3.5475 -3.6484 -0.2105 13 14 4.5526 -4.9464 2.0213 14 1 4.1743 -4.4805 3.3796 15 1 3.6636 -6.0650 1.6167 16 1 5.9622 -5.4132 2.0329 17 6 5.8239 -0.0457 0.4411 18 6 4.9734 1.1644 0.0001 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.9272 2.1189 -0.0007 23 1 3.0322 -4.4614 -0.3310 24 1 5.9637 -0.0465 1.5221 25 1 6.7859 -0.0530 -0.0715 26 1 5.0877 1.9851 0.7083 27 1 5.2633 1.4858 -1.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259914119.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:23 Heat of formation + Delta-G solvation = 83.718772 kcal Electronic energy + Delta-G solvation = -11885.358328 eV Core-core repulsion = 9838.147775 eV Total energy + Delta-G solvation = -2047.210553 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.25636 -35.66630 -32.35699 -31.12137 -29.11196 -26.71975 -25.25020 -23.34355 -20.73869 -18.87506 -18.37610 -16.17192 -15.53111 -14.63509 -14.37423 -13.76501 -13.34802 -12.95686 -11.98939 -11.81740 -11.71752 -11.44055 -11.16213 -10.78100 -10.66150 -10.45642 -9.91827 -9.50537 -9.08039 -8.82999 -8.25607 -7.85788 -7.19768 -5.83833 -3.91349 2.94428 3.40712 3.45123 3.47427 3.51920 4.15665 4.56564 5.09247 5.47228 5.48578 5.62976 5.74178 5.84609 6.04925 6.14331 6.34405 6.51978 6.75045 6.93776 7.09639 7.14257 7.28912 7.76673 7.92496 8.03955 8.16084 8.45920 9.07028 9.22309 9.72458 11.22426 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036284 B = 0.015353 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.506377 B = 1823.259348 C = 2423.862421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.409 5.409 3 C 0.036 3.964 4 C -0.289 4.289 5 C 0.125 3.875 6 N -0.239 5.239 7 C 0.118 3.882 8 H 0.045 0.955 9 C -0.528 4.528 10 H 0.058 0.942 11 C 0.069 3.931 12 N -0.853 5.853 13 Si 0.888 3.112 14 H -0.279 1.279 15 H -0.289 1.289 16 H -0.277 1.277 17 C -0.111 4.111 18 C -0.031 4.031 19 H 0.060 0.940 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.152 0.848 23 H 0.259 0.741 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 8.341 0.067 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.192 5.192 3 C -0.108 4.108 4 C -0.301 4.301 5 C -0.046 4.046 6 N -0.057 5.057 7 C 0.097 3.903 8 H 0.063 0.937 9 C -0.566 4.566 10 H 0.076 0.924 11 C -0.136 4.136 12 N -0.488 5.488 13 Si 0.716 3.284 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.149 4.149 18 C -0.069 4.069 19 H 0.078 0.922 20 H 0.099 0.901 21 H 0.090 0.910 22 H 0.169 0.831 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.947 7.209 -0.039 8.218 hybrid contribution 0.165 -0.001 0.673 0.693 sum -3.781 7.208 0.634 8.164 Atomic orbital electron populations 1.21479 0.76252 1.03026 1.01898 1.49083 1.05858 1.04475 1.59757 1.21203 0.90750 0.92524 1.06369 1.21160 0.94297 0.97284 1.17401 1.23976 0.94939 0.91973 0.93666 1.77677 1.01750 1.02415 1.23872 1.17903 0.82560 0.92020 0.97794 0.93683 1.20975 1.25644 0.98864 1.11151 0.92394 1.24986 0.94978 0.98287 0.95340 1.69983 1.24089 1.26554 1.28215 0.86737 0.77790 0.82074 0.81798 1.20526 1.21438 1.20286 1.22399 0.97382 0.94477 1.00622 1.20278 0.89527 0.97565 0.99536 0.92158 0.90133 0.91020 0.83088 0.93088 0.91885 0.92131 0.93093 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.76 11.47 59.85 0.69 2.44 15 2 N -0.41 -8.75 4.01 -68.14 -0.27 -9.03 15 3 C 0.04 0.70 11.49 -17.20 -0.20 0.51 15 4 C -0.29 -6.47 6.87 -104.72 -0.72 -7.19 15 5 C 0.12 3.31 6.63 -82.02 -0.54 2.77 15 6 N -0.24 -6.45 11.58 33.86 0.39 -6.06 15 7 C 0.12 3.10 2.81 -91.92 -0.26 2.84 15 8 H 0.05 1.27 8.14 -51.93 -0.42 0.84 15 9 C -0.53 -15.10 8.52 -34.44 -0.29 -15.39 15 10 H 0.06 1.61 7.63 -52.48 -0.40 1.21 15 11 C 0.07 2.01 5.32 -17.82 -0.09 1.92 15 12 N -0.85 -25.77 11.71 55.43 0.65 -25.12 15 13 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 15 14 H -0.28 -6.99 7.11 56.52 0.40 -6.59 15 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 17 C -0.11 -2.34 6.54 -25.33 -0.17 -2.50 15 18 C -0.03 -0.59 6.76 -26.89 -0.18 -0.77 15 19 H 0.06 0.81 8.14 -51.92 -0.42 0.39 15 20 H 0.08 1.23 8.14 -51.93 -0.42 0.81 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.15 2.27 8.06 -52.49 -0.42 1.85 15 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 24 H 0.06 1.33 7.79 -51.93 -0.40 0.92 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.70 15 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 15 LS Contribution 233.37 15.07 3.52 3.52 Total: -1.00 -33.42 233.37 -5.83 -39.25 By element: Atomic # 1 Polarization: -1.02 SS G_CDS: -3.32 Total: -4.34 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.77 Total: -15.38 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.77 Total: -40.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -33.42 -5.83 -39.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914119.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.966 kcal (2) G-P(sol) polarization free energy of solvation -33.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds