Wall clock time and date at job start Mon Mar 30 2020 02:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34893 * 126.02895 * 2 1 4 4 C 1.35455 * 107.77240 * 180.22604 * 3 2 1 5 5 C 1.39860 * 107.91216 * 359.64048 * 4 3 2 6 6 N 1.31035 * 108.12873 * 0.36158 * 5 4 3 7 7 C 1.51328 * 109.50813 * 180.22163 * 5 4 3 8 8 H 1.09005 * 110.28919 * 258.41211 * 7 5 4 9 9 C 1.50696 * 110.29019 * 136.38918 * 7 5 4 10 10 H 1.08005 * 119.99851 * 241.45036 * 9 7 5 11 11 C 1.37879 * 120.00537 * 61.45159 * 9 7 5 12 12 N 1.31510 * 119.99466 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99933 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47395 * 59.99791 * 13 11 9 15 15 H 1.48500 * 109.46875 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47222 * 299.99633 * 13 11 9 17 17 C 1.54331 * 105.22541 * 17.44847 * 7 5 4 18 18 C 1.51287 * 142.52851 * 180.53647 * 4 3 2 19 19 H 1.09009 * 109.46979 * 90.00370 * 1 2 3 20 20 H 1.09003 * 109.47100 * 209.99920 * 1 2 3 21 21 H 1.08996 * 109.47625 * 330.00526 * 1 2 3 22 22 H 1.08002 * 126.11099 * 359.95531 * 3 2 1 23 23 H 0.97005 * 119.99124 * 180.02562 * 12 11 9 24 24 H 1.09003 * 110.76904 * 91.76006 * 17 7 5 25 25 H 1.09000 * 110.76711 * 214.98511 * 17 7 5 26 26 H 1.08996 * 110.42921 * 43.17825 * 18 4 3 27 27 H 1.09003 * 110.18438 * 281.12498 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2584 1.0909 0.0000 4 6 3.5448 0.6666 -0.0051 5 6 3.5364 -0.7320 0.0000 6 7 2.2887 -1.1323 0.0001 7 6 4.9597 -1.2459 0.0001 8 1 5.2442 -1.5711 -1.0007 9 6 5.1050 -2.3823 0.9790 10 1 5.7826 -2.2916 1.8151 11 6 4.3729 -3.5381 0.8074 12 7 3.5475 -3.6484 -0.2105 13 14 4.5526 -4.9464 2.0213 14 1 4.1743 -4.4805 3.3796 15 1 3.6636 -6.0650 1.6167 16 1 5.9622 -5.4132 2.0329 17 6 5.8239 -0.0457 0.4411 18 6 4.9734 1.1644 0.0001 19 1 -0.3633 -0.0001 -1.0278 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5137 22 1 1.9272 2.1189 -0.0007 23 1 3.0322 -4.4614 -0.3310 24 1 5.9637 -0.0465 1.5221 25 1 6.7859 -0.0530 -0.0715 26 1 5.0877 1.9851 0.7083 27 1 5.2633 1.4858 -1.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259914119.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:23 Heat of formation + Delta-G solvation = 61.459917 kcal Electronic energy + Delta-G solvation = -11886.323544 eV Core-core repulsion = 9838.147775 eV Total energy + Delta-G solvation = -2048.175769 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.93507 -37.38525 -34.43458 -32.66948 -30.88277 -28.55608 -26.75456 -25.33532 -22.33934 -20.51640 -20.22770 -18.26306 -17.06989 -16.49797 -16.13903 -15.30750 -15.06801 -14.40600 -13.89502 -13.49737 -13.23403 -13.07786 -12.95387 -12.58481 -12.41465 -12.34556 -11.70111 -11.42627 -10.98285 -10.65454 -10.39334 -9.66853 -8.82088 -8.01869 -6.16002 1.35465 1.39889 1.42336 1.48907 2.06648 2.30635 2.48358 3.28559 3.61189 4.19345 4.38069 4.48089 4.50049 4.57570 4.69139 4.75332 4.94440 5.11489 5.24795 5.44799 5.50059 5.66035 5.73881 5.86872 6.17214 6.34907 6.62739 6.91344 7.44097 7.51049 9.03015 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.036284 B = 0.015353 C = 0.011549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.506377 B = 1823.259348 C = 2423.862421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.410 5.410 3 C 0.056 3.944 4 C -0.313 4.313 5 C 0.083 3.917 6 N -0.301 5.301 7 C 0.103 3.897 8 H 0.009 0.991 9 C -0.546 4.546 10 H 0.058 0.942 11 C 0.017 3.983 12 N -0.884 5.884 13 Si 0.951 3.049 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.263 1.263 17 C -0.103 4.103 18 C -0.021 4.021 19 H 0.077 0.923 20 H 0.071 0.929 21 H 0.118 0.882 22 H 0.209 0.791 23 H 0.254 0.746 24 H 0.059 0.941 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 10.344 0.781 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.193 5.193 3 C -0.089 4.089 4 C -0.325 4.325 5 C -0.086 4.086 6 N -0.121 5.121 7 C 0.083 3.917 8 H 0.027 0.973 9 C -0.585 4.585 10 H 0.076 0.924 11 C -0.185 4.185 12 N -0.520 5.520 13 Si 0.777 3.223 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.188 1.188 17 C -0.141 4.141 18 C -0.059 4.059 19 H 0.096 0.904 20 H 0.089 0.911 21 H 0.137 0.863 22 H 0.226 0.774 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.432 9.214 0.679 10.247 hybrid contribution 0.220 -0.583 0.417 0.750 sum -4.212 8.631 1.096 9.666 Atomic orbital electron populations 1.21926 0.73015 1.04917 1.03669 1.49419 1.07745 1.03731 1.58374 1.22007 0.89581 0.94291 1.03010 1.21670 0.96716 0.95450 1.18713 1.23944 0.94684 0.94533 0.95409 1.77465 1.02871 1.05988 1.25775 1.17965 0.84620 0.93691 0.95452 0.97314 1.21393 1.25405 1.00105 1.11552 0.92400 1.25781 0.94769 1.00874 0.97052 1.70160 1.25045 1.26802 1.29991 0.85738 0.78322 0.78953 0.79318 1.20413 1.21316 1.18821 1.22327 0.97885 0.93365 1.00540 1.20255 0.87196 0.97109 1.01319 0.90412 0.91052 0.86337 0.77395 0.93682 0.92214 0.90075 0.89941 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.89 11.47 127.77 1.47 4.36 15 2 N -0.41 -16.79 4.01 -369.49 -1.48 -18.27 15 3 C 0.06 2.03 11.49 83.58 0.96 2.99 15 4 C -0.31 -13.49 6.87 -19.93 -0.14 -13.62 15 5 C 0.08 4.47 6.63 43.27 0.29 4.76 15 6 N -0.30 -16.48 11.58 -46.80 -0.54 -17.02 15 7 C 0.10 5.59 2.81 -11.64 -0.03 5.56 15 8 H 0.01 0.54 8.14 -2.38 -0.02 0.52 15 9 C -0.55 -32.11 8.52 25.60 0.22 -31.89 15 10 H 0.06 3.28 7.63 -2.91 -0.02 3.25 15 11 C 0.02 1.03 5.32 84.66 0.45 1.48 15 12 N -0.88 -55.44 11.71 21.45 0.25 -55.19 15 13 Si 0.95 46.53 29.54 68.60 2.03 48.55 15 14 H -0.28 -13.45 7.11 99.48 0.71 -12.75 15 15 H -0.29 -13.87 7.11 99.48 0.71 -13.16 15 16 H -0.26 -12.18 7.11 99.48 0.71 -11.47 15 17 C -0.10 -4.29 6.54 31.50 0.21 -4.08 15 18 C -0.02 -0.74 6.76 30.49 0.21 -0.54 15 19 H 0.08 1.88 8.14 -2.38 -0.02 1.86 15 20 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.12 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.21 4.96 8.06 -2.91 -0.02 4.93 15 23 H 0.25 15.39 8.31 -92.70 -0.77 14.62 15 24 H 0.06 2.47 7.79 -2.39 -0.02 2.45 15 25 H 0.08 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.08 2.42 8.14 -2.39 -0.02 2.40 15 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -75.78 233.37 5.03 -70.75 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: 1.15 Total: 2.16 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.62 Total: -30.98 kcal Atomic # 7 Polarization: -88.71 SS G_CDS: -1.77 Total: -90.48 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.78 5.03 -70.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259914119.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.214 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds