Wall clock time and date at job start Mon Mar 30 2020 02:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39784 * 126.05259 * 2 1 4 4 N 1.30702 * 108.21053 * 180.02562 * 3 2 1 5 5 N 1.40541 * 108.28195 * 0.09526 * 4 3 2 6 6 C 1.34711 * 107.73019 * 359.78352 * 5 4 3 7 7 C 1.51426 * 110.14628 * 180.24617 * 6 5 4 8 8 H 1.08996 * 110.60152 * 257.79878 * 7 6 5 9 9 C 1.50698 * 110.48666 * 135.20849 * 7 6 5 10 10 H 1.08005 * 119.99819 * 3.77367 * 9 7 6 11 11 C 1.37875 * 120.00046 * 183.76708 * 9 7 6 12 12 N 1.31511 * 120.00192 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47297 * 180.02562 * 13 11 9 15 15 H 1.48503 * 109.47261 * 60.00310 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00304 * 13 11 9 17 17 C 1.54560 * 104.19612 * 16.53372 * 7 6 5 18 18 C 1.47147 * 141.26119 * 179.72973 * 5 4 3 19 19 H 1.09003 * 109.46273 * 89.97731 * 1 2 3 20 20 H 1.09000 * 109.47279 * 209.97853 * 1 2 3 21 21 H 1.09002 * 109.47084 * 329.98378 * 1 2 3 22 22 H 1.07997 * 125.89349 * 0.04931 * 3 2 1 23 23 H 0.97001 * 119.99934 * 359.97438 * 12 11 9 24 24 H 1.09000 * 110.96649 * 92.97932 * 17 7 6 25 25 H 1.09000 * 110.96725 * 216.74818 * 17 7 6 26 26 H 1.08997 * 110.22642 * 43.91646 * 18 5 4 27 27 H 1.09002 * 110.29782 * 282.00175 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3297 1.1301 0.0000 4 7 3.5739 0.7297 -0.0006 5 7 3.5847 -0.6757 -0.0031 6 6 2.3047 -1.0958 0.0007 7 6 2.2525 -2.6092 0.0043 8 1 2.0215 -2.9873 -0.9915 9 6 1.2354 -3.0995 1.0023 10 1 0.6265 -2.3915 1.5449 11 6 1.0821 -4.4518 1.2226 12 7 1.8238 -5.3139 0.5621 13 14 -0.1792 -5.0596 2.4591 14 1 -0.1470 -6.5435 2.5105 15 1 -1.5328 -4.6074 2.0486 16 1 0.1398 -4.5113 3.8018 17 6 3.6760 -3.0365 0.4284 18 6 4.5143 -1.8164 -0.0095 19 1 -0.3632 0.0004 -1.0277 20 1 -0.3634 -0.8902 0.5135 21 1 -0.3633 0.8899 0.5141 22 1 1.9950 2.1569 0.0008 23 1 2.4785 -4.9984 -0.0803 24 1 3.7342 -3.1830 1.5069 25 1 3.9881 -3.9354 -0.1034 26 1 5.3267 -1.6443 0.6965 27 1 4.9133 -1.9734 -1.0116 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925793.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:37 Heat of formation + Delta-G solvation = 55.330246 kcal Electronic energy + Delta-G solvation = -11935.970250 eV Core-core repulsion = 9887.528678 eV Total energy + Delta-G solvation = -2048.441572 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.55367 -37.66795 -34.90690 -32.94148 -30.02525 -29.57252 -26.82702 -25.13549 -22.79360 -21.50342 -20.49612 -18.72244 -17.39334 -16.24566 -15.67260 -15.29207 -14.88911 -14.82067 -14.40488 -13.83663 -13.42368 -13.29486 -13.12000 -12.75552 -12.49158 -12.17708 -11.93090 -11.86368 -11.47418 -10.85912 -10.51361 -10.02088 -9.09000 -8.57819 -6.33250 1.01196 1.48401 1.58348 1.63801 1.83684 1.90837 2.58532 3.18408 3.43588 3.91308 3.96294 4.05755 4.21618 4.45160 4.51954 4.68680 4.73676 4.98153 5.02661 5.08429 5.19254 5.34037 5.54468 5.87753 5.93996 6.04545 6.20926 6.63346 6.91590 7.42905 8.80384 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043197 B = 0.013882 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.031270 B = 2016.499816 C = 2510.690464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.262 4.262 3 C 0.053 3.947 4 N -0.321 5.321 5 N -0.412 5.412 6 C 0.084 3.916 7 C 0.075 3.925 8 H 0.025 0.975 9 C -0.595 4.595 10 H 0.049 0.951 11 C -0.019 4.019 12 N -0.931 5.931 13 Si 1.110 2.890 14 H -0.283 1.283 15 H -0.272 1.272 16 H -0.276 1.276 17 C -0.114 4.114 18 C 0.132 3.868 19 H 0.059 0.941 20 H 0.046 0.954 21 H 0.080 0.920 22 H 0.223 0.777 23 H 0.265 0.735 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 6.666 -0.372 6.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.274 4.274 3 C -0.132 4.132 4 N -0.141 5.141 5 N -0.195 5.195 6 C -0.045 4.045 7 C 0.055 3.945 8 H 0.043 0.957 9 C -0.633 4.633 10 H 0.067 0.933 11 C -0.218 4.218 12 N -0.568 5.568 13 Si 0.932 3.068 14 H -0.209 1.209 15 H -0.197 1.197 16 H -0.202 1.202 17 C -0.153 4.153 18 C 0.012 3.988 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.099 0.901 22 H 0.239 0.761 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.075 5.705 0.293 5.812 hybrid contribution 0.039 0.981 -0.833 1.288 sum 1.114 6.686 -0.541 6.800 Atomic orbital electron populations 1.19999 0.88426 1.02138 1.01389 1.19751 0.98097 0.90478 1.19029 1.24287 0.88917 1.00619 0.99388 1.77072 1.22379 0.86732 1.27961 1.50347 1.07700 1.04105 1.57326 1.22754 0.87003 0.97132 0.97607 1.18247 0.94738 0.84647 0.96854 0.95728 1.21987 1.21984 0.94433 1.24928 0.93319 1.27027 1.00816 0.93421 1.00566 1.70932 1.22859 1.37559 1.25494 0.82994 0.74094 0.75682 0.73991 1.20880 1.19682 1.20202 1.22834 0.95172 0.95836 1.01483 1.22499 0.91745 0.80900 1.03612 0.92215 0.93498 0.90083 0.76102 0.92339 0.91982 0.89199 0.88353 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.15 10.37 71.24 0.74 -1.42 15 2 C -0.26 -10.74 6.10 -20.11 -0.12 -10.86 15 3 C 0.05 1.90 11.95 85.23 1.02 2.92 15 4 N -0.32 -13.14 12.70 -57.15 -0.73 -13.87 15 5 N -0.41 -17.68 4.85 -330.19 -1.60 -19.28 15 6 C 0.08 3.86 6.68 41.72 0.28 4.14 15 7 C 0.08 3.70 2.51 -11.52 -0.03 3.67 15 8 H 0.03 1.31 8.06 -2.39 -0.02 1.29 15 9 C -0.60 -31.97 8.28 25.60 0.21 -31.75 15 10 H 0.05 2.66 6.62 -2.91 -0.02 2.64 15 11 C -0.02 -1.00 5.33 84.65 0.45 -0.55 15 12 N -0.93 -52.39 13.42 21.45 0.29 -52.10 15 13 Si 1.11 48.06 29.90 68.60 2.05 50.11 15 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 16 H -0.28 -11.38 7.11 99.48 0.71 -10.68 15 17 C -0.11 -4.87 5.57 31.59 0.18 -4.69 15 18 C 0.13 4.84 7.78 86.72 0.67 5.51 15 19 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 20 H 0.05 1.86 6.77 -2.39 -0.02 1.84 15 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.22 5.63 8.06 -2.91 -0.02 5.61 15 23 H 0.27 14.60 5.46 -92.71 -0.51 14.09 15 24 H 0.06 2.84 7.91 -2.39 -0.02 2.82 15 25 H 0.09 3.68 6.86 -2.39 -0.02 3.67 15 26 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 27 H 0.10 3.08 8.14 -2.39 -0.02 3.06 15 Total: -1.00 -63.29 229.07 4.83 -58.45 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.42 Total: 9.71 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 3.40 Total: -33.02 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -2.04 Total: -85.25 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.05 Total: 50.11 kcal Total: -63.29 4.83 -58.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925793.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.782 kcal (2) G-P(sol) polarization free energy of solvation -63.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds