Wall clock time and date at job start Mon Mar 30 2020 02:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39792 * 126.05582 * 2 1 4 4 N 1.30707 * 108.21084 * 179.97438 * 3 2 1 5 5 N 1.40534 * 108.28233 * 359.91747 * 4 3 2 6 6 C 1.34716 * 107.73130 * 0.16226 * 5 4 3 7 7 C 1.51423 * 110.14189 * 179.61400 * 6 5 4 8 8 H 1.08999 * 110.48755 * 102.39881 * 7 6 5 9 9 C 1.50704 * 110.48505 * 225.03141 * 7 6 5 10 10 H 1.08004 * 119.99615 * 5.30815 * 9 7 6 11 11 C 1.37880 * 120.00047 * 185.30387 * 9 7 6 12 12 N 1.31504 * 120.00016 * 8.42284 * 11 9 7 13 13 Si 1.86794 * 119.99645 * 188.42371 * 11 9 7 14 14 H 1.48502 * 109.47255 * 94.97420 * 13 11 9 15 15 H 1.48506 * 109.47256 * 214.97330 * 13 11 9 16 16 H 1.48497 * 109.47565 * 334.97634 * 13 11 9 17 17 C 1.54459 * 104.24976 * 343.71286 * 7 6 5 18 18 C 1.47144 * 141.26041 * 180.30502 * 5 4 3 19 19 H 1.09001 * 109.47142 * 270.04439 * 1 2 3 20 20 H 1.09001 * 109.47046 * 30.04501 * 1 2 3 21 21 H 1.09006 * 109.47128 * 150.04174 * 1 2 3 22 22 H 1.07999 * 125.89132 * 359.90966 * 3 2 1 23 23 H 0.97006 * 120.00070 * 179.97438 * 12 11 9 24 24 H 1.09006 * 110.86077 * 266.86230 * 17 7 6 25 25 H 1.09004 * 111.05065 * 143.11751 * 17 7 6 26 26 H 1.09000 * 110.23341 * 316.04841 * 18 5 4 27 27 H 1.09001 * 110.22880 * 77.91949 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3297 1.1301 0.0000 4 7 3.5739 0.7296 0.0006 5 7 3.5846 -0.6757 0.0029 6 6 2.3046 -1.0958 0.0000 7 6 2.2525 -2.6091 -0.0073 8 1 2.0196 -2.9876 0.9880 9 6 1.2379 -3.0971 -1.0091 10 1 0.7355 -2.3927 -1.6557 11 6 0.9510 -4.4426 -1.1002 12 7 1.4338 -5.2797 -0.2084 13 14 -0.1235 -5.0763 -2.4906 14 1 0.7366 -5.5454 -3.6066 15 1 -0.9552 -6.2040 -1.9989 16 1 -1.0061 -3.9833 -2.9718 17 6 3.6758 -3.0365 -0.4283 18 6 4.5141 -1.8163 0.0095 19 1 -0.3633 0.0008 1.0277 20 1 -0.3633 0.8896 -0.5145 21 1 -0.3634 -0.8904 -0.5132 22 1 1.9950 2.1570 -0.0014 23 1 1.2317 -6.2263 -0.2723 24 1 3.7340 -3.1830 -1.5069 25 1 3.9880 -3.9354 0.1035 26 1 5.3268 -1.6446 -0.6963 27 1 4.9129 -1.9717 1.0120 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925796.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:40 Heat of formation + Delta-G solvation = 75.115202 kcal Electronic energy + Delta-G solvation = -11881.370681 eV Core-core repulsion = 9833.787050 eV Total energy + Delta-G solvation = -2047.583631 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.79432 -35.62756 -32.86272 -31.26160 -28.44786 -27.87947 -25.15945 -23.25881 -21.02622 -19.83614 -18.36182 -16.53098 -15.32022 -14.67296 -14.34686 -13.59065 -13.13179 -12.92717 -12.38771 -11.98492 -11.77377 -11.55763 -11.30204 -11.12409 -10.86342 -10.63679 -10.27533 -9.88437 -9.59459 -9.27744 -8.62649 -8.26079 -7.34752 -6.18133 -4.19818 2.78348 3.14406 3.24664 3.32590 3.36820 3.60202 4.35069 5.13639 5.21573 5.58242 5.61787 5.77830 5.93487 6.08059 6.20038 6.47666 6.50421 6.67164 6.71140 6.88807 7.04967 7.28342 7.43668 7.56711 7.74690 7.80395 8.18076 8.62824 8.82620 9.44387 10.91794 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.013596 C = 0.011179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.664891 B = 2058.919612 C = 2504.079103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.255 4.255 3 C 0.041 3.959 4 N -0.310 5.310 5 N -0.403 5.403 6 C 0.117 3.883 7 C 0.094 3.906 8 H 0.066 0.934 9 C -0.508 4.508 10 H 0.065 0.935 11 C 0.066 3.934 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.115 4.115 18 C 0.129 3.871 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.071 0.929 22 H 0.175 0.825 23 H 0.263 0.737 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 4.564 0.178 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.266 4.266 3 C -0.144 4.144 4 N -0.130 5.130 5 N -0.185 5.185 6 C -0.012 4.012 7 C 0.074 3.926 8 H 0.083 0.917 9 C -0.546 4.546 10 H 0.083 0.917 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.196 1.196 17 C -0.154 4.154 18 C 0.008 3.992 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.090 0.910 22 H 0.192 0.808 23 H 0.073 0.927 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.699 4.777 0.234 5.492 hybrid contribution -1.244 -0.575 -0.710 1.544 sum 1.455 4.202 -0.475 4.472 Atomic orbital electron populations 1.19954 0.90147 1.01653 1.00436 1.19203 0.96578 0.90406 1.20405 1.23583 0.90188 0.99064 1.01535 1.77089 1.21087 0.87228 1.27628 1.50122 1.07879 1.03489 1.56979 1.22974 0.85502 0.97962 0.94812 1.18224 0.93211 0.81661 0.99489 0.91664 1.20878 1.22680 0.92242 1.18803 0.91725 1.24954 0.95859 0.96902 0.95905 1.69942 1.45582 1.03542 1.33552 0.86529 0.80383 0.78650 0.82262 1.20637 1.21159 1.19616 1.22898 0.96108 0.94282 1.02118 1.22457 0.92196 0.82973 1.01572 0.93494 0.93545 0.91016 0.80772 0.92686 0.90751 0.89395 0.90863 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.37 36.00 0.37 -0.81 15 2 C -0.25 -5.42 6.10 -105.01 -0.64 -6.06 15 3 C 0.04 0.81 11.95 -17.45 -0.21 0.60 15 4 N -0.31 -6.70 12.70 30.59 0.39 -6.31 15 5 N -0.40 -8.86 4.85 -55.72 -0.27 -9.13 15 6 C 0.12 2.69 6.68 -81.94 -0.55 2.15 15 7 C 0.09 2.27 2.69 -91.80 -0.25 2.02 15 8 H 0.07 1.70 8.07 -51.93 -0.42 1.28 15 9 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 15 10 H 0.06 1.71 7.08 -52.48 -0.37 1.34 15 11 C 0.07 1.73 5.34 -17.82 -0.10 1.64 15 12 N -0.89 -23.88 13.13 55.43 0.73 -23.16 15 13 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 15 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 15 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 17 C -0.11 -2.42 6.45 -25.24 -0.16 -2.58 15 18 C 0.13 2.42 7.78 -2.97 -0.02 2.40 15 19 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.05 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.07 1.44 7.05 -51.93 -0.37 1.08 15 22 H 0.18 2.65 8.06 -52.49 -0.42 2.23 15 23 H 0.26 6.77 8.31 -40.82 -0.34 6.43 15 24 H 0.07 1.61 7.90 -51.93 -0.41 1.20 15 25 H 0.09 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.07 1.23 8.14 -51.93 -0.42 0.80 15 27 H 0.07 1.23 8.14 -51.93 -0.42 0.80 15 LS Contribution 234.10 15.07 3.53 3.53 Total: -1.00 -28.69 234.10 -5.71 -34.40 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.24 Total: -0.54 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -1.83 Total: -14.12 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.85 Total: -38.60 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.69 -5.71 -34.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925796.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.514 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds