Wall clock time and date at job start Mon Mar 30 2020 02:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.47186 * 2 1 4 4 N 1.31809 * 119.12396 * 269.97476 * 3 2 1 5 5 C 1.32313 * 120.81954 * 179.72922 * 4 3 2 6 6 C 1.38624 * 119.10338 * 0.57390 * 5 4 3 7 7 C 1.38574 * 118.39673 * 359.43958 * 6 5 4 8 8 C 1.50703 * 120.44930 * 180.30273 * 7 6 5 9 9 C 1.50694 * 109.47414 * 125.00206 * 8 7 6 10 10 H 1.08001 * 120.00177 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00238 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99354 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00288 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47116 * 89.99648 * 13 11 9 15 15 H 1.48501 * 109.47450 * 209.99801 * 13 11 9 16 16 H 1.48503 * 109.47116 * 330.00000 * 13 11 9 17 17 N 1.31789 * 119.12383 * 90.00339 * 3 2 1 18 18 H 1.08992 * 109.47378 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46859 * 300.00271 * 1 2 3 20 20 H 1.09007 * 109.46861 * 59.99747 * 1 2 3 21 21 H 1.08996 * 109.47018 * 239.99455 * 2 1 3 22 22 H 1.09003 * 109.46423 * 120.00087 * 2 1 3 23 23 H 1.07999 * 120.44989 * 180.31173 * 5 4 3 24 24 H 1.08002 * 120.80485 * 179.72100 * 6 5 4 25 25 H 1.08999 * 109.47184 * 245.00090 * 8 7 6 26 26 H 1.09005 * 109.47091 * 4.99580 * 8 7 6 27 27 H 0.97005 * 119.99253 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2467 2.0254 -1.1514 5 6 2.6825 3.2741 -1.1906 6 6 2.9247 3.9414 0.0001 7 6 2.6876 3.2725 1.1904 8 6 2.9287 3.9561 2.5116 9 6 1.6736 3.8984 3.3435 10 1 0.7894 3.4154 2.9543 11 6 1.6534 4.4631 4.6012 12 7 2.7299 5.0516 5.0750 13 14 0.0974 4.3922 5.6322 14 1 0.1064 3.1579 6.4578 15 1 0.0370 5.5811 6.5199 16 1 -1.0885 4.3811 4.7384 17 7 2.2462 2.0255 1.1513 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8932 -0.5139 0.8900 23 1 2.8513 3.7655 -2.1374 24 1 3.2851 4.9595 0.0002 25 1 3.7379 3.4515 3.0395 26 1 3.2019 4.9969 2.3377 27 1 2.7156 5.4493 5.9597 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259926251.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:58 Heat of formation + Delta-G solvation = 6.376977 kcal Electronic energy + Delta-G solvation = -11369.726272 eV Core-core repulsion = 9319.161928 eV Total energy + Delta-G solvation = -2050.564345 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.88855 -36.22512 -35.04918 -34.35278 -31.90839 -30.01265 -26.14781 -25.80938 -23.59978 -22.16384 -18.81778 -18.14859 -17.26830 -16.39287 -16.22215 -15.74169 -14.98716 -14.64466 -14.39345 -14.14494 -13.60060 -13.17489 -12.79389 -12.66189 -12.58604 -12.04824 -11.94354 -11.77048 -11.56419 -11.24756 -10.65317 -10.18850 -9.98045 -8.25431 -6.34656 0.07875 0.28665 1.38257 1.39844 1.50601 2.38240 2.89765 3.07514 3.12391 3.33160 3.82383 4.19860 4.29983 4.33908 4.40933 4.43160 4.85525 4.90829 4.98659 5.11722 5.22991 5.29149 5.37381 5.63117 5.67394 6.07255 6.28633 6.72852 7.30665 7.34732 8.86128 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.010708 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.994306 B = 2614.231977 C = 3119.559515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C 0.296 3.704 4 N -0.544 5.544 5 C 0.150 3.850 6 C -0.245 4.245 7 C 0.184 3.816 8 C 0.065 3.935 9 C -0.521 4.521 10 H 0.048 0.952 11 C 0.008 3.992 12 N -0.927 5.927 13 Si 0.965 3.035 14 H -0.273 1.273 15 H -0.275 1.275 16 H -0.270 1.270 17 N -0.540 5.540 18 H 0.094 0.906 19 H 0.035 0.965 20 H 0.054 0.946 21 H 0.107 0.893 22 H 0.086 0.914 23 H 0.209 0.791 24 H 0.162 0.838 25 H 0.016 0.984 26 H 0.033 0.967 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -5.291 -10.667 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C 0.028 3.972 4 N -0.259 5.259 5 C -0.015 4.015 6 C -0.266 4.266 7 C 0.040 3.960 8 C 0.028 3.972 9 C -0.559 4.559 10 H 0.066 0.934 11 C -0.191 4.191 12 N -0.567 5.567 13 Si 0.790 3.210 14 H -0.199 1.199 15 H -0.200 1.200 16 H -0.195 1.195 17 N -0.255 5.255 18 H 0.113 0.887 19 H 0.054 0.946 20 H 0.073 0.927 21 H 0.125 0.875 22 H 0.104 0.896 23 H 0.226 0.774 24 H 0.180 0.820 25 H 0.034 0.966 26 H 0.051 0.949 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.410 -6.116 -10.510 12.396 hybrid contribution -0.107 1.179 0.931 1.506 sum -2.517 -4.937 -9.578 11.066 Atomic orbital electron populations 1.21631 0.92996 1.03548 1.01154 1.20415 0.97278 0.86740 1.04557 1.23893 0.91350 0.98476 0.83467 1.68255 1.16053 1.11562 1.30043 1.23794 0.89056 0.89318 0.99338 1.23025 1.05820 1.04059 0.93736 1.22387 0.86843 0.89315 0.97422 1.18123 0.97012 0.94396 0.87716 1.21151 0.97491 1.36288 1.00980 0.93407 1.25830 0.99857 0.94625 0.98746 1.70046 1.29857 1.38111 1.18671 0.85441 0.79170 0.78008 0.78389 1.19858 1.19973 1.19503 1.68134 1.14640 1.11593 1.31139 0.88739 0.94601 0.92657 0.87506 0.89576 0.77423 0.81988 0.96566 0.94877 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.89 71.98 0.71 -2.79 15 2 C -0.05 -1.47 6.37 29.85 0.19 -1.28 15 3 C 0.30 11.14 6.90 138.75 0.96 12.09 15 4 N -0.54 -18.64 10.33 -187.84 -1.94 -20.58 15 5 C 0.15 4.57 11.31 84.71 0.96 5.53 15 6 C -0.24 -8.81 9.80 22.44 0.22 -8.59 15 7 C 0.18 8.49 6.15 42.56 0.26 8.75 15 8 C 0.06 3.48 5.41 29.10 0.16 3.64 15 9 C -0.52 -30.33 8.93 25.60 0.23 -30.10 15 10 H 0.05 2.83 7.70 -2.91 -0.02 2.81 15 11 C 0.01 0.45 5.46 84.66 0.46 0.91 15 12 N -0.93 -55.28 13.29 21.45 0.28 -54.99 15 13 Si 0.97 44.94 29.54 68.60 2.03 46.97 15 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 15 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.27 -12.31 7.11 99.48 0.71 -11.61 15 17 N -0.54 -24.60 10.01 -176.03 -1.76 -26.36 15 18 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 19 H 0.03 1.10 8.14 -2.38 -0.02 1.08 15 20 H 0.05 1.41 8.14 -2.38 -0.02 1.39 15 21 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 22 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 23 H 0.21 4.08 8.06 -2.91 -0.02 4.06 15 24 H 0.16 4.96 8.01 -2.91 -0.02 4.94 15 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 15 26 H 0.03 1.77 7.94 -2.38 -0.02 1.75 15 27 H 0.27 14.91 8.31 -92.70 -0.77 14.14 15 Total: -1.00 -67.67 243.57 3.90 -63.77 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.15 Total: 3.04 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.15 Total: -11.84 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -3.42 Total: -101.94 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.67 3.90 -63.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259926251.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.148 kcal (2) G-P(sol) polarization free energy of solvation -67.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds