Wall clock time and date at job start Mon Mar 30 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38614 * 120.80019 * 2 1 4 4 N 1.32324 * 119.10398 * 179.72168 * 3 2 1 5 5 C 1.31806 * 120.81494 * 0.56015 * 4 3 2 6 6 N 1.31787 * 121.75471 * 359.71322 * 5 4 3 7 7 C 1.32349 * 120.81891 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.44486 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46897 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47188 * 300.01954 * 8 7 6 11 11 C 1.50703 * 109.47271 * 60.02452 * 8 7 6 12 12 H 1.08006 * 120.00063 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00259 * 180.02562 * 11 8 7 14 14 N 1.31520 * 119.99512 * 359.97438 * 13 11 8 15 15 Si 1.86795 * 120.00109 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47087 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47358 * 119.99690 * 15 13 11 18 18 H 1.48503 * 109.46740 * 239.99780 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.72233 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72334 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72315 * 1 2 3 22 22 H 1.08004 * 120.44886 * 359.97256 * 3 2 1 23 23 H 1.08001 * 119.12481 * 179.72610 * 5 4 3 24 24 H 1.09000 * 109.47182 * 179.97438 * 10 8 7 25 25 H 1.08996 * 109.47407 * 300.00104 * 10 8 7 26 26 H 1.09000 * 109.47194 * 60.00191 * 10 8 7 27 27 H 0.96997 * 119.99366 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1906 0.0000 4 7 3.5394 1.1515 0.0056 5 6 4.1809 0.0000 0.0001 6 7 3.5395 -1.1512 -0.0055 7 6 2.2165 -1.1903 -0.0053 8 6 1.4917 -2.5115 -0.0124 9 1 0.4160 -2.3357 -0.0116 10 6 1.8787 -3.2988 -1.2658 11 6 1.8728 -3.3002 1.2139 12 1 2.5705 -2.8863 1.9269 13 6 1.3316 -4.5506 1.4252 14 7 0.4824 -5.0548 0.5567 15 14 1.8046 -5.5284 2.9449 16 1 2.7696 -4.7448 3.7572 17 1 0.5897 -5.8076 3.7519 18 1 2.4309 -6.8105 2.5334 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5095 22 1 1.6973 2.1375 -0.0004 23 1 5.2609 0.0000 0.0004 24 1 1.3547 -4.2546 -1.2707 25 1 1.6030 -2.7284 -2.1528 26 1 2.9544 -3.4746 -1.2668 27 1 0.1014 -5.9343 0.7055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259927956.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:04 Heat of formation + Delta-G solvation = 32.460259 kcal Electronic energy + Delta-G solvation = -11733.275619 eV Core-core repulsion = 9683.842331 eV Total energy + Delta-G solvation = -2049.433289 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.39258 -35.10854 -33.13684 -32.51038 -29.84265 -26.98912 -25.19618 -24.00150 -22.11720 -20.29220 -17.21469 -16.48642 -15.64278 -14.52930 -14.25847 -13.85236 -13.29648 -12.90162 -12.59226 -12.47608 -11.83092 -11.54077 -11.00707 -10.94677 -10.50574 -10.34455 -10.08580 -9.97214 -9.71879 -9.01015 -8.47428 -8.39722 -8.33682 -6.05964 -4.10842 1.56135 1.83031 3.28163 3.36169 3.41916 4.36932 4.51100 4.70101 4.91945 5.21194 5.29201 5.41771 5.52905 5.95009 6.04203 6.21658 6.45941 6.54834 6.79405 6.96310 7.10062 7.22972 7.51845 7.71781 7.87784 8.01164 8.29339 8.85016 8.89414 9.52454 11.00347 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045900 B = 0.011782 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.879728 B = 2375.994715 C = 2540.304946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.203 4.203 3 C 0.130 3.870 4 N -0.545 5.545 5 C 0.271 3.729 6 N -0.503 5.503 7 C 0.219 3.781 8 C 0.077 3.923 9 H 0.054 0.946 10 C -0.129 4.129 11 C -0.496 4.496 12 H 0.057 0.943 13 C 0.062 3.938 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.072 0.928 20 H 0.080 0.920 21 H 0.059 0.941 22 H 0.155 0.845 23 H 0.184 0.816 24 H 0.089 0.911 25 H 0.004 0.996 26 H 0.038 0.962 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 7.598 -1.430 7.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.207 4.207 3 C -0.035 4.035 4 N -0.260 5.260 5 C -0.017 4.017 6 N -0.216 5.216 7 C 0.074 3.926 8 C 0.058 3.942 9 H 0.071 0.929 10 C -0.187 4.187 11 C -0.535 4.535 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.530 5.530 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 H 0.090 0.910 20 H 0.099 0.901 21 H 0.078 0.922 22 H 0.172 0.828 23 H 0.201 0.799 24 H 0.108 0.892 25 H 0.024 0.976 26 H 0.057 0.943 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.141 7.441 -1.456 7.667 hybrid contribution -0.523 -0.485 0.849 1.109 sum 0.619 6.955 -0.607 7.009 Atomic orbital electron populations 1.20664 0.89838 1.02760 1.02706 1.21617 0.99034 0.95164 1.04883 1.22889 0.89962 0.97592 0.93057 1.68269 1.09991 1.31459 1.16267 1.24839 1.00864 0.83325 0.92651 1.68358 1.10526 1.29580 1.13168 1.22639 0.89012 0.96947 0.84004 1.18087 0.94660 0.85306 0.96148 0.92865 1.21720 1.00687 1.02249 0.94081 1.20938 1.26121 1.01139 1.05257 0.92462 1.24916 0.94930 0.97359 0.96735 1.69880 1.30261 1.17695 1.35209 0.86451 0.78282 0.79969 0.82845 1.19819 1.21004 1.20876 0.90964 0.90086 0.92193 0.82788 0.79940 0.89224 0.97644 0.94259 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.47 36.01 0.34 -1.26 15 2 C -0.20 -3.80 5.91 -104.36 -0.62 -4.42 15 3 C 0.13 2.20 11.01 -17.20 -0.19 2.01 15 4 N -0.55 -9.92 10.44 -14.58 -0.15 -10.07 15 5 C 0.27 5.10 12.29 -92.15 -1.13 3.97 15 6 N -0.50 -11.14 10.07 -10.80 -0.11 -11.25 15 7 C 0.22 4.90 5.42 -82.25 -0.45 4.46 15 8 C 0.08 1.90 2.39 -92.93 -0.22 1.68 15 9 H 0.05 1.33 5.61 -51.93 -0.29 1.04 15 10 C -0.13 -3.15 8.88 37.15 0.33 -2.82 15 11 C -0.50 -13.60 8.45 -34.44 -0.29 -13.89 15 12 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 13 C 0.06 1.68 5.30 -17.82 -0.09 1.59 15 14 N -0.89 -24.75 11.32 55.43 0.63 -24.12 15 15 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 15 16 H -0.27 -6.54 7.11 56.52 0.40 -6.13 15 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 19 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 20 H 0.08 1.37 6.21 -51.93 -0.32 1.04 15 21 H 0.06 0.74 8.10 -51.93 -0.42 0.32 15 22 H 0.15 2.01 8.06 -52.48 -0.42 1.58 15 23 H 0.18 2.76 8.06 -52.49 -0.42 2.33 15 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 15 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 15 26 H 0.04 0.97 8.07 -51.93 -0.42 0.55 15 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 LS Contribution 234.31 15.07 3.53 3.53 Total: -1.00 -29.48 234.31 -6.45 -35.92 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -3.00 Total: -1.62 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.32 Total: -8.68 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.37 Total: -45.44 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.48 -6.45 -35.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927956.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.382 kcal (2) G-P(sol) polarization free energy of solvation -29.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds