Wall clock time and date at job start Mon Mar 30 2020 02:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38614 * 120.80019 * 2 1 4 4 N 1.32324 * 119.10398 * 179.72168 * 3 2 1 5 5 C 1.31806 * 120.81494 * 0.56015 * 4 3 2 6 6 N 1.31787 * 121.75471 * 359.71322 * 5 4 3 7 7 C 1.32349 * 120.81891 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.44486 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46897 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47188 * 300.01954 * 8 7 6 11 11 C 1.50703 * 109.47271 * 60.02452 * 8 7 6 12 12 H 1.08006 * 120.00063 * 359.97438 * 11 8 7 13 13 C 1.37879 * 120.00259 * 180.02562 * 11 8 7 14 14 N 1.31520 * 119.99512 * 359.97438 * 13 11 8 15 15 Si 1.86795 * 120.00109 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47087 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47358 * 119.99690 * 15 13 11 18 18 H 1.48503 * 109.46740 * 239.99780 * 15 13 11 19 19 H 1.09002 * 109.47152 * 269.72233 * 1 2 3 20 20 H 1.09001 * 109.46980 * 149.72334 * 1 2 3 21 21 H 1.09004 * 109.47113 * 29.72315 * 1 2 3 22 22 H 1.08004 * 120.44886 * 359.97256 * 3 2 1 23 23 H 1.08001 * 119.12481 * 179.72610 * 5 4 3 24 24 H 1.09000 * 109.47182 * 179.97438 * 10 8 7 25 25 H 1.08996 * 109.47407 * 300.00104 * 10 8 7 26 26 H 1.09000 * 109.47194 * 60.00191 * 10 8 7 27 27 H 0.96997 * 119.99366 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1906 0.0000 4 7 3.5394 1.1515 0.0056 5 6 4.1809 0.0000 0.0001 6 7 3.5395 -1.1512 -0.0055 7 6 2.2165 -1.1903 -0.0053 8 6 1.4917 -2.5115 -0.0124 9 1 0.4160 -2.3357 -0.0116 10 6 1.8787 -3.2988 -1.2658 11 6 1.8728 -3.3002 1.2139 12 1 2.5705 -2.8863 1.9269 13 6 1.3316 -4.5506 1.4252 14 7 0.4824 -5.0548 0.5567 15 14 1.8046 -5.5284 2.9449 16 1 2.7696 -4.7448 3.7572 17 1 0.5897 -5.8076 3.7519 18 1 2.4309 -6.8105 2.5334 19 1 -0.3633 -0.0050 1.0277 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5095 22 1 1.6973 2.1375 -0.0004 23 1 5.2609 0.0000 0.0004 24 1 1.3547 -4.2546 -1.2707 25 1 1.6030 -2.7284 -2.1528 26 1 2.9544 -3.4746 -1.2668 27 1 0.1014 -5.9343 0.7055 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259927956.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:03 Heat of formation + Delta-G solvation = 15.050143 kcal Electronic energy + Delta-G solvation = -11734.030578 eV Core-core repulsion = 9683.842331 eV Total energy + Delta-G solvation = -2050.188248 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87560 -36.88650 -34.57723 -34.32052 -31.69342 -28.34471 -27.26487 -25.65271 -23.55105 -22.06408 -18.87907 -18.18685 -17.43519 -16.39422 -15.76757 -15.24536 -14.86553 -14.71150 -14.20063 -13.76048 -13.50838 -13.18224 -12.89811 -12.85853 -12.39182 -12.18250 -11.89154 -11.68007 -11.38434 -10.91448 -10.48089 -9.93988 -9.88239 -8.13288 -6.24639 0.12567 0.32451 1.38839 1.41648 1.52579 2.41740 2.98873 3.15424 3.40088 3.45715 3.82238 4.08772 4.14936 4.63152 4.75528 4.79133 4.87779 5.00933 5.14357 5.20101 5.29398 5.52920 5.65915 5.79307 5.97788 6.20645 6.34292 6.78322 7.35447 7.41625 8.91968 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045900 B = 0.011782 C = 0.011020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.879728 B = 2375.994715 C = 2540.304946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.206 4.206 3 C 0.141 3.859 4 N -0.544 5.544 5 C 0.266 3.734 6 N -0.538 5.538 7 C 0.185 3.815 8 C 0.076 3.924 9 H 0.046 0.954 10 C -0.117 4.117 11 C -0.512 4.512 12 H 0.038 0.962 13 C 0.020 3.980 14 N -0.912 5.912 15 Si 0.954 3.046 16 H -0.278 1.278 17 H -0.274 1.274 18 H -0.278 1.278 19 H 0.075 0.925 20 H 0.062 0.938 21 H 0.100 0.900 22 H 0.202 0.798 23 H 0.213 0.787 24 H 0.067 0.933 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 9.135 -1.145 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.210 4.210 3 C -0.024 4.024 4 N -0.258 5.258 5 C -0.022 4.022 6 N -0.252 5.252 7 C 0.041 3.959 8 C 0.057 3.943 9 H 0.064 0.936 10 C -0.175 4.175 11 C -0.551 4.551 12 H 0.056 0.944 13 C -0.180 4.180 14 N -0.551 5.551 15 Si 0.780 3.220 16 H -0.202 1.202 17 H -0.199 1.199 18 H -0.204 1.204 19 H 0.094 0.906 20 H 0.081 0.919 21 H 0.119 0.881 22 H 0.219 0.781 23 H 0.230 0.770 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.991 8.973 -1.175 9.104 hybrid contribution -0.460 -0.880 0.736 1.237 sum 0.531 8.093 -0.439 8.122 Atomic orbital electron populations 1.20698 0.87832 1.03870 1.03209 1.21896 1.00546 0.94507 1.04054 1.23611 0.89539 0.98673 0.90619 1.68392 1.10736 1.30837 1.15866 1.25400 1.02162 0.82682 0.91942 1.68251 1.10892 1.31570 1.14467 1.22359 0.89620 0.97112 0.86822 1.17917 0.94604 0.86767 0.94984 0.93590 1.21537 0.99319 1.01490 0.95176 1.21096 1.25905 1.01953 1.06147 0.94356 1.25588 0.94940 0.98166 0.99256 1.69968 1.30765 1.18036 1.36376 0.85570 0.78122 0.78525 0.79807 1.20245 1.19946 1.20398 0.90619 0.91939 0.88108 0.78113 0.77034 0.91390 0.95867 0.95582 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.86 9.47 71.24 0.67 -2.19 15 2 C -0.21 -7.34 5.91 -19.69 -0.12 -7.45 15 3 C 0.14 4.28 11.01 84.71 0.93 5.22 15 4 N -0.54 -18.28 10.44 -200.03 -2.09 -20.37 15 5 C 0.27 9.58 12.29 180.88 2.22 11.80 15 6 N -0.54 -23.71 10.07 -188.08 -1.89 -25.61 15 7 C 0.19 8.25 5.42 42.56 0.23 8.48 15 8 C 0.08 3.83 2.39 -12.29 -0.03 3.80 15 9 H 0.05 2.35 5.61 -2.39 -0.01 2.34 15 10 C -0.12 -5.83 8.88 71.98 0.64 -5.19 15 11 C -0.51 -28.67 8.45 25.60 0.22 -28.45 15 12 H 0.04 2.23 7.74 -2.91 -0.02 2.21 15 13 C 0.02 1.08 5.30 84.65 0.45 1.52 15 14 N -0.91 -51.22 11.32 21.45 0.24 -50.97 15 15 Si 0.95 44.00 29.54 68.60 2.03 46.03 15 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 15 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 19 H 0.08 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.06 2.05 6.21 -2.39 -0.01 2.04 15 21 H 0.10 2.07 8.10 -2.38 -0.02 2.05 15 22 H 0.20 4.12 8.06 -2.91 -0.02 4.10 15 23 H 0.21 6.00 8.06 -2.91 -0.02 5.98 15 24 H 0.07 3.65 6.07 -2.39 -0.01 3.63 15 25 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 26 H 0.02 1.30 8.07 -2.39 -0.02 1.28 15 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 Total: -1.00 -63.45 234.31 4.67 -58.79 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.16 Total: 4.57 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 5.22 Total: -12.44 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -3.74 Total: -96.95 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -63.45 4.67 -58.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927956.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.838 kcal (2) G-P(sol) polarization free energy of solvation -63.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds