Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.34669 * 126.58890 * 274.68353 * 10 9 7 12 12 N 1.34126 * 108.02117 * 179.88014 * 11 10 9 13 13 C 1.30505 * 109.25330 * 0.39359 * 12 11 10 14 14 C 1.50702 * 125.64624 * 179.73419 * 13 12 11 15 15 C 1.53003 * 117.49380 * 163.77474 * 14 13 12 16 16 C 1.52998 * 117.49578 * 95.12041 * 14 13 12 17 17 N 1.35035 * 108.69827 * 359.76113 * 13 12 11 18 18 H 0.97008 * 126.39375 * 179.97438 * 17 13 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08003 * 125.99068 * 0.02562 * 11 10 9 23 23 H 1.08997 * 115.55137 * 309.44095 * 14 13 12 24 24 H 1.09000 * 117.49872 * 0.02562 * 15 14 13 25 25 H 1.09000 * 117.49994 * 145.02219 * 15 14 13 26 26 H 1.09004 * 117.49820 * 214.97591 * 16 14 13 27 27 H 1.09000 * 117.50095 * 359.97276 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8190 -4.1926 -1.0905 12 7 3.6207 -5.1818 -0.6689 13 6 3.5446 -5.2732 0.6307 14 6 4.2894 -6.2651 1.4865 15 6 4.3704 -5.9820 2.9880 16 6 5.6111 -5.8095 2.1082 17 7 2.6875 -4.3320 1.0814 18 1 2.4416 -4.1730 2.0062 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.6733 -3.8873 -2.1161 23 1 4.2126 -7.3065 1.1742 24 1 3.8847 -5.0785 3.3567 25 1 4.3474 -6.8372 3.6634 26 1 6.4038 -6.5514 2.2051 27 1 5.9422 -4.7926 1.8978 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259930914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = 65.815595 kcal Electronic energy + Delta-G solvation = -11301.536303 eV Core-core repulsion = 9253.549411 eV Total energy + Delta-G solvation = -2047.986893 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.36166 -36.88738 -33.41778 -31.75867 -30.26791 -26.81772 -23.68434 -22.46623 -22.11317 -20.07234 -19.54220 -16.83177 -16.38548 -15.53598 -14.59585 -14.27862 -13.80780 -12.96438 -12.61929 -12.18886 -11.87631 -11.60665 -11.46432 -10.86838 -10.75546 -10.57666 -10.45866 -10.03217 -9.57214 -9.21468 -9.19230 -8.49914 -7.33380 -6.11891 -4.17317 2.79132 3.27950 3.32319 3.35930 3.63658 3.80321 3.98779 4.39220 4.61478 4.85786 5.02801 5.22412 5.39978 5.57402 5.75276 5.94715 6.02141 6.12863 6.31557 6.55503 6.74848 7.34376 7.56951 7.60726 7.82670 8.07323 8.23400 8.81158 8.86921 9.47534 10.96969 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051468 B = 0.008682 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.896009 B = 3224.429312 C = 3407.368450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.082 3.918 10 C 0.045 3.955 11 C -0.060 4.060 12 N -0.485 5.485 13 C 0.192 3.808 14 C -0.060 4.060 15 C -0.181 4.181 16 C -0.163 4.163 17 N -0.563 5.563 18 H 0.411 0.589 19 H 0.264 0.736 20 H 0.025 0.975 21 H 0.046 0.954 22 H 0.164 0.836 23 H 0.124 0.876 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.044 -8.790 5.253 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.556 4.556 8 H 0.075 0.925 9 C 0.044 3.956 10 C -0.071 4.071 11 C -0.206 4.206 12 N -0.205 5.205 13 C -0.070 4.070 14 C -0.080 4.080 15 C -0.218 4.218 16 C -0.201 4.201 17 N -0.167 5.167 18 H 0.248 0.752 19 H 0.074 0.926 20 H 0.043 0.957 21 H 0.064 0.936 22 H 0.181 0.819 23 H 0.142 0.858 24 H 0.110 0.890 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.373 -9.170 4.657 12.099 hybrid contribution -0.202 1.616 0.897 1.859 sum 6.171 -7.554 5.554 11.225 Atomic orbital electron populations 1.69938 1.06037 1.27166 1.50060 1.24999 0.94900 0.99326 0.94936 0.86548 0.79502 0.82563 0.78796 1.19986 1.21147 1.20274 1.21022 0.93108 0.89784 1.51664 0.92466 1.17882 0.91287 0.87549 0.98852 1.22390 1.01666 0.97332 0.85754 1.21911 1.01495 0.98230 0.98963 1.69984 1.22018 1.20406 1.08121 1.21738 0.98671 0.95826 0.90774 1.20006 0.99092 0.97020 0.91847 1.23009 1.02676 1.03596 0.92538 1.23010 0.91139 1.03228 1.02745 1.43093 1.35986 1.27741 1.09921 0.75174 0.92622 0.95675 0.93565 0.81910 0.85810 0.88951 0.87937 0.88104 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 13.29 55.43 0.74 -25.09 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.52 -14.32 9.09 -34.44 -0.31 -14.63 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 15 9 C 0.08 2.09 5.53 -29.03 -0.16 1.93 15 10 C 0.05 1.01 6.43 -81.60 -0.52 0.49 15 11 C -0.06 -1.34 11.79 -17.81 -0.21 -1.55 15 12 N -0.49 -10.37 11.25 -10.82 -0.12 -10.49 15 13 C 0.19 3.56 7.65 -155.42 -1.19 2.37 15 14 C -0.06 -0.82 6.33 -91.77 -0.58 -1.40 15 15 C -0.18 -1.98 10.12 -26.69 -0.27 -2.25 15 16 C -0.16 -1.93 10.24 -26.70 -0.27 -2.21 15 17 N -0.56 -10.78 6.01 -6.54 -0.04 -10.82 15 18 H 0.41 6.76 8.13 -40.82 -0.33 6.43 15 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.05 1.22 8.14 -51.93 -0.42 0.80 15 22 H 0.16 3.41 8.06 -52.48 -0.42 2.98 15 23 H 0.12 1.53 8.14 -51.93 -0.42 1.11 15 24 H 0.09 1.04 7.32 -51.93 -0.38 0.66 15 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 15 27 H 0.10 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 242.46 15.07 3.65 3.65 Total: -1.00 -30.76 242.46 -7.62 -38.38 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -3.21 Total: 3.73 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -3.62 Total: -15.66 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.58 Total: -46.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.76 -7.62 -38.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.200 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds