Wall clock time and date at job start Mon Mar 30 2020 01:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.34669 * 126.58890 * 274.68353 * 10 9 7 12 12 N 1.34126 * 108.02117 * 179.88014 * 11 10 9 13 13 C 1.30505 * 109.25330 * 0.39359 * 12 11 10 14 14 C 1.50702 * 125.64624 * 179.73419 * 13 12 11 15 15 C 1.53003 * 117.49380 * 163.77474 * 14 13 12 16 16 C 1.52998 * 117.49578 * 95.12041 * 14 13 12 17 17 N 1.35035 * 108.69827 * 359.76113 * 13 12 11 18 18 H 0.97008 * 126.39375 * 179.97438 * 17 13 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08003 * 125.99068 * 0.02562 * 11 10 9 23 23 H 1.08997 * 115.55137 * 309.44095 * 14 13 12 24 24 H 1.09000 * 117.49872 * 0.02562 * 15 14 13 25 25 H 1.09000 * 117.49994 * 145.02219 * 15 14 13 26 26 H 1.09004 * 117.49820 * 214.97591 * 16 14 13 27 27 H 1.09000 * 117.50095 * 359.97276 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.8190 -4.1926 -1.0905 12 7 3.6207 -5.1818 -0.6689 13 6 3.5446 -5.2732 0.6307 14 6 4.2894 -6.2651 1.4865 15 6 4.3704 -5.9820 2.9880 16 6 5.6111 -5.8095 2.1082 17 7 2.6875 -4.3320 1.0814 18 1 2.4416 -4.1730 2.0062 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.6733 -3.8873 -2.1161 23 1 4.2126 -7.3065 1.1742 24 1 3.8847 -5.0785 3.3567 25 1 4.3474 -6.8372 3.6634 26 1 6.4038 -6.5514 2.2051 27 1 5.9422 -4.7926 1.8978 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:08 Heat of formation + Delta-G solvation = 46.963081 kcal Electronic energy + Delta-G solvation = -11302.353810 eV Core-core repulsion = 9253.549411 eV Total energy + Delta-G solvation = -2048.804399 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.96138 -37.92128 -35.48149 -33.44802 -32.12527 -28.60879 -25.49435 -23.72587 -23.31717 -21.70231 -21.00332 -18.61042 -18.22646 -16.69181 -16.52602 -15.77306 -15.15796 -14.55977 -14.45768 -14.15536 -13.55296 -13.11109 -12.71923 -12.63860 -12.43002 -12.03297 -11.77112 -11.45695 -11.41165 -10.92359 -10.85446 -10.61266 -9.03768 -8.23388 -6.38593 1.19889 1.39880 1.41697 1.50356 2.14612 2.23655 2.40882 2.86670 3.06859 3.44502 3.88329 4.05357 4.29365 4.32925 4.54916 4.74129 4.79643 4.87907 5.01348 5.15940 5.22097 5.23545 5.66224 5.67633 5.84062 6.09199 6.61887 6.71090 7.18647 7.31022 8.83918 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.051468 B = 0.008682 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.896009 B = 3224.429312 C = 3407.368450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.095 3.905 10 C 0.018 3.982 11 C -0.068 4.068 12 N -0.515 5.515 13 C 0.216 3.784 14 C -0.088 4.088 15 C -0.158 4.158 16 C -0.156 4.156 17 N -0.557 5.557 18 H 0.423 0.577 19 H 0.268 0.732 20 H 0.012 0.988 21 H 0.024 0.976 22 H 0.165 0.835 23 H 0.143 0.857 24 H 0.088 0.912 25 H 0.136 0.864 26 H 0.131 0.869 27 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.516 -9.352 6.618 13.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.057 3.943 10 C -0.099 4.099 11 C -0.214 4.214 12 N -0.236 5.236 13 C -0.047 4.047 14 C -0.107 4.107 15 C -0.196 4.196 16 C -0.195 4.195 17 N -0.162 5.162 18 H 0.262 0.738 19 H 0.077 0.923 20 H 0.030 0.970 21 H 0.043 0.957 22 H 0.182 0.818 23 H 0.160 0.840 24 H 0.106 0.894 25 H 0.154 0.846 26 H 0.149 0.851 27 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.838 -9.732 6.033 13.876 hybrid contribution -0.631 1.698 0.503 1.880 sum 7.208 -8.034 6.536 12.618 Atomic orbital electron populations 1.70043 1.07485 1.28275 1.50596 1.25838 0.95744 1.02855 0.94268 0.85498 0.78315 0.78195 0.79033 1.19570 1.20299 1.19399 1.21270 0.92899 0.91163 1.51970 0.93222 1.17541 0.91376 0.88317 0.97093 1.21887 1.02814 0.98022 0.87182 1.22052 1.01600 0.98542 0.99189 1.70027 1.22962 1.20847 1.09749 1.22731 0.96576 0.94812 0.90631 1.20288 1.00574 0.96542 0.93329 1.23172 1.00931 1.04565 0.90915 1.23101 0.91454 1.02974 1.01924 1.43027 1.35805 1.27445 1.09925 0.73760 0.92301 0.97001 0.95735 0.81808 0.83962 0.89391 0.84624 0.85135 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.29 21.45 0.28 -53.78 15 2 C 0.01 0.68 5.46 84.66 0.46 1.14 15 3 Si 0.97 43.60 29.54 68.60 2.03 45.62 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 15 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.53 -30.13 9.09 25.60 0.23 -29.90 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.09 4.98 5.53 29.10 0.16 5.15 15 10 C 0.02 0.81 6.43 40.95 0.26 1.07 15 11 C -0.07 -3.10 11.79 83.52 0.98 -2.11 15 12 N -0.52 -21.89 11.25 -188.13 -2.12 -24.00 15 13 C 0.22 7.77 7.65 138.13 1.06 8.83 15 14 C -0.09 -2.16 6.33 -11.54 -0.07 -2.24 15 15 C -0.16 -2.87 10.12 30.62 0.31 -2.56 15 16 C -0.16 -3.19 10.24 30.62 0.31 -2.88 15 17 N -0.56 -21.11 6.01 -174.61 -1.05 -22.15 15 18 H 0.42 13.59 8.13 -92.70 -0.75 12.84 15 19 H 0.27 14.72 8.31 -92.70 -0.77 13.95 15 20 H 0.01 0.63 8.14 -2.38 -0.02 0.61 15 21 H 0.02 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.16 7.11 8.06 -2.91 -0.02 7.08 15 23 H 0.14 3.04 8.14 -2.39 -0.02 3.02 15 24 H 0.09 1.70 7.32 -2.39 -0.02 1.68 15 25 H 0.14 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.13 1.91 8.14 -2.38 -0.02 1.89 15 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 15 Total: -1.00 -66.10 242.46 3.27 -62.83 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.42 Total: 14.99 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 3.71 Total: -23.50 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -2.88 Total: -99.94 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -66.10 3.27 -62.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.793 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds