Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47655 * 2 1 4 4 C 1.50707 * 109.47278 * 240.00062 * 2 1 3 5 5 H 1.07996 * 119.99834 * 245.67973 * 4 2 1 6 6 C 1.37876 * 119.99679 * 65.67617 * 4 2 1 7 7 N 1.31509 * 119.99945 * 197.98455 * 6 4 2 8 8 Si 1.86800 * 120.00033 * 17.98650 * 6 4 2 9 9 H 1.48508 * 109.47074 * 179.97438 * 8 6 4 10 10 H 1.48505 * 109.46960 * 299.99451 * 8 6 4 11 11 H 1.48500 * 109.47230 * 59.99669 * 8 6 4 12 12 C 1.50700 * 109.47074 * 120.00218 * 2 1 3 13 13 C 1.38345 * 120.44994 * 64.53806 * 12 2 1 14 14 C 1.38846 * 118.50216 * 179.75466 * 13 12 2 15 15 C 1.38068 * 119.32900 * 0.49303 * 14 13 12 16 16 N 1.31950 * 120.85333 * 359.77105 * 15 14 13 17 17 C 1.32419 * 121.62168 * 359.97300 * 16 15 14 18 18 N 1.39010 * 119.70504 * 180.02562 * 17 16 15 19 19 H 1.09006 * 109.47118 * 177.80094 * 1 2 3 20 20 H 1.09002 * 109.47276 * 297.79714 * 1 2 3 21 21 H 1.08995 * 109.47078 * 57.79947 * 1 2 3 22 22 H 0.97003 * 120.00467 * 354.87418 * 7 6 4 23 23 H 1.07990 * 120.74969 * 359.97438 * 13 12 2 24 24 H 1.08001 * 120.33748 * 180.20931 * 14 13 12 25 25 H 1.08000 * 119.57093 * 179.74464 * 15 14 13 26 26 H 0.96996 * 120.00015 * 188.16272 * 18 17 16 27 27 H 0.97001 * 119.99815 * 8.16757 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5755 -1.6389 -1.1340 6 6 1.7984 -0.1750 -2.4794 7 7 1.9078 -0.9310 -3.5499 8 14 1.3262 1.6242 -2.6507 9 1 1.1317 1.9503 -4.0865 10 1 0.0644 1.8774 -1.9098 11 1 2.4075 2.4751 -2.0923 12 6 2.0323 -0.7105 1.2304 13 6 1.7826 -2.0590 1.4125 14 6 2.2687 -2.6740 2.5584 15 6 2.9727 -1.9258 3.4808 16 7 3.1913 -0.6396 3.2835 17 6 2.7485 -0.0181 2.2012 18 7 3.0021 1.3384 2.0336 19 1 -0.3634 -1.0270 -0.0394 20 1 -0.3634 0.4792 0.9091 21 1 -0.3633 0.5476 -0.8696 22 1 2.2248 -1.8442 -3.4685 23 1 1.2252 -2.6213 0.6781 24 1 2.0939 -3.7261 2.7288 25 1 3.3490 -2.3993 4.3755 26 1 2.5822 1.8240 1.3065 27 1 3.5990 1.7992 2.6437 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259949207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = 27.949720 kcal Electronic energy + Delta-G solvation = -11778.428384 eV Core-core repulsion = 9728.799504 eV Total energy + Delta-G solvation = -2049.628880 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 3.71 seconds Orbital eigenvalues (eV) -39.65558 -35.02074 -33.97933 -31.96227 -30.07137 -28.08154 -24.78630 -23.31726 -22.01953 -19.60945 -17.70107 -16.87794 -16.66690 -14.83658 -14.31731 -14.04403 -13.66665 -13.42080 -12.63120 -12.47625 -12.07814 -11.83691 -11.29135 -10.74895 -10.53125 -10.28388 -9.85655 -9.72784 -9.03756 -8.83553 -8.75534 -8.22240 -7.15245 -6.45934 -4.09753 1.98571 2.12245 3.32577 3.36345 3.55100 4.10431 4.44319 4.58727 5.21236 5.26402 5.57317 5.78788 5.83610 6.08300 6.19646 6.40572 6.65109 6.71822 6.79736 6.85183 7.18341 7.31453 7.44165 7.84157 8.01967 8.07392 8.34849 8.81072 8.87808 9.58048 10.90485 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047872 B = 0.012967 C = 0.011480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.749943 B = 2158.883397 C = 2438.439542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 H 0.022 0.978 4 C -0.592 4.592 5 H 0.058 0.942 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 1.044 2.956 9 H -0.285 1.285 10 H -0.272 1.272 11 H -0.284 1.284 12 C -0.136 4.136 13 C -0.035 4.035 14 C -0.234 4.234 15 C 0.113 3.887 16 N -0.553 5.553 17 C 0.387 3.613 18 N -0.856 5.856 19 H 0.047 0.953 20 H 0.022 0.978 21 H 0.055 0.945 22 H 0.268 0.732 23 H 0.130 0.870 24 H 0.120 0.880 25 H 0.143 0.857 26 H 0.408 0.592 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 1.960 9.741 9.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.039 3.961 3 H 0.040 0.960 4 C -0.630 4.630 5 H 0.076 0.924 6 C -0.175 4.175 7 N -0.539 5.539 8 Si 0.873 3.127 9 H -0.211 1.211 10 H -0.199 1.199 11 H -0.210 1.210 12 C -0.143 4.143 13 C -0.061 4.061 14 C -0.257 4.257 15 C -0.044 4.044 16 N -0.271 5.271 17 C 0.151 3.849 18 N -0.403 5.403 19 H 0.066 0.934 20 H 0.041 0.959 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.138 0.862 25 H 0.160 0.840 26 H 0.241 0.759 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.757 3.531 9.231 9.912 hybrid contribution 0.193 -1.443 0.430 1.518 sum -0.564 2.088 9.662 9.901 Atomic orbital electron populations 1.22254 0.98122 1.00900 0.99054 1.17943 0.92123 0.94734 0.91262 0.96036 1.21959 1.40499 1.09946 0.90552 0.92410 1.25771 0.94556 1.05028 0.92137 1.70853 1.41753 1.09679 1.31599 0.84065 0.77016 0.75456 0.76192 1.21133 1.19898 1.21026 1.20578 1.01799 0.94984 0.96900 1.21215 0.95674 0.93799 0.95432 1.21743 1.05644 1.00814 0.97540 1.22061 0.95517 0.88665 0.98114 1.67039 1.26599 1.11744 1.21714 1.18239 0.91520 0.85992 0.89190 1.42272 1.54739 1.06515 1.36776 0.93380 0.95922 0.92604 0.92212 0.85241 0.86203 0.83950 0.75925 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.71 37.16 0.32 -2.80 15 2 C 0.06 1.36 1.99 -92.92 -0.19 1.18 15 3 H 0.02 0.48 4.40 -51.93 -0.23 0.26 15 4 C -0.59 -16.14 8.46 -34.44 -0.29 -16.43 15 5 H 0.06 1.72 7.64 -52.49 -0.40 1.32 15 6 C 0.03 0.85 5.34 -17.82 -0.10 0.75 15 7 N -0.90 -27.27 13.69 55.43 0.76 -26.51 15 8 Si 1.04 24.24 26.40 -169.99 -4.49 19.75 15 9 H -0.29 -6.76 7.11 56.52 0.40 -6.35 15 10 H -0.27 -5.78 5.57 56.52 0.32 -5.47 15 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 15 12 C -0.14 -2.93 4.78 -104.26 -0.50 -3.43 15 13 C -0.04 -0.72 8.73 -39.32 -0.34 -1.06 15 14 C -0.23 -4.05 10.10 -39.42 -0.40 -4.45 15 15 C 0.11 1.92 11.17 -17.56 -0.20 1.72 15 16 N -0.55 -10.60 10.39 -12.43 -0.13 -10.73 15 17 C 0.39 7.76 7.73 -155.01 -1.20 6.56 15 18 N -0.86 -14.50 8.98 31.13 0.28 -14.22 15 19 H 0.05 1.02 7.82 -51.93 -0.41 0.62 15 20 H 0.02 0.42 8.14 -51.93 -0.42 0.00 15 21 H 0.06 1.22 4.84 -51.93 -0.25 0.97 15 22 H 0.27 8.07 8.73 -40.82 -0.36 7.72 15 23 H 0.13 2.63 7.88 -52.49 -0.41 2.22 15 24 H 0.12 1.70 8.06 -52.49 -0.42 1.28 15 25 H 0.14 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.41 6.69 6.52 -40.82 -0.27 6.43 15 27 H 0.39 5.64 8.95 -40.82 -0.37 5.28 15 LS Contribution 227.33 15.07 3.43 3.43 Total: -1.00 -30.44 227.33 -5.87 -36.32 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -2.84 Total: 9.93 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.88 Total: -17.96 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.91 Total: -51.47 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -4.49 Total: 19.75 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.44 -5.87 -36.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.267 kcal (2) G-P(sol) polarization free energy of solvation -30.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds