Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47655 * 2 1 4 4 C 1.50707 * 109.47278 * 240.00062 * 2 1 3 5 5 H 1.07996 * 119.99834 * 245.67973 * 4 2 1 6 6 C 1.37876 * 119.99679 * 65.67617 * 4 2 1 7 7 N 1.31509 * 119.99945 * 197.98455 * 6 4 2 8 8 Si 1.86800 * 120.00033 * 17.98650 * 6 4 2 9 9 H 1.48508 * 109.47074 * 179.97438 * 8 6 4 10 10 H 1.48505 * 109.46960 * 299.99451 * 8 6 4 11 11 H 1.48500 * 109.47230 * 59.99669 * 8 6 4 12 12 C 1.50700 * 109.47074 * 120.00218 * 2 1 3 13 13 C 1.38345 * 120.44994 * 64.53806 * 12 2 1 14 14 C 1.38846 * 118.50216 * 179.75466 * 13 12 2 15 15 C 1.38068 * 119.32900 * 0.49303 * 14 13 12 16 16 N 1.31950 * 120.85333 * 359.77105 * 15 14 13 17 17 C 1.32419 * 121.62168 * 359.97300 * 16 15 14 18 18 N 1.39010 * 119.70504 * 180.02562 * 17 16 15 19 19 H 1.09006 * 109.47118 * 177.80094 * 1 2 3 20 20 H 1.09002 * 109.47276 * 297.79714 * 1 2 3 21 21 H 1.08995 * 109.47078 * 57.79947 * 1 2 3 22 22 H 0.97003 * 120.00467 * 354.87418 * 7 6 4 23 23 H 1.07990 * 120.74969 * 359.97438 * 13 12 2 24 24 H 1.08001 * 120.33748 * 180.20931 * 14 13 12 25 25 H 1.08000 * 119.57093 * 179.74464 * 15 14 13 26 26 H 0.96996 * 120.00015 * 188.16272 * 18 17 16 27 27 H 0.97001 * 119.99815 * 8.16757 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5755 -1.6389 -1.1340 6 6 1.7984 -0.1750 -2.4794 7 7 1.9078 -0.9310 -3.5499 8 14 1.3262 1.6242 -2.6507 9 1 1.1317 1.9503 -4.0865 10 1 0.0644 1.8774 -1.9098 11 1 2.4075 2.4751 -2.0923 12 6 2.0323 -0.7105 1.2304 13 6 1.7826 -2.0590 1.4125 14 6 2.2687 -2.6740 2.5584 15 6 2.9727 -1.9258 3.4808 16 7 3.1913 -0.6396 3.2835 17 6 2.7485 -0.0181 2.2012 18 7 3.0021 1.3384 2.0336 19 1 -0.3634 -1.0270 -0.0394 20 1 -0.3634 0.4792 0.9091 21 1 -0.3633 0.5476 -0.8696 22 1 2.2248 -1.8442 -3.4685 23 1 1.2252 -2.6213 0.6781 24 1 2.0939 -3.7261 2.7288 25 1 3.3490 -2.3993 4.3755 26 1 2.5822 1.8240 1.3065 27 1 3.5990 1.7992 2.6437 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259949207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 6.873355 kcal Electronic energy + Delta-G solvation = -11779.342324 eV Core-core repulsion = 9728.799504 eV Total energy + Delta-G solvation = -2050.542820 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.12808 -36.75530 -35.45235 -33.92027 -31.66855 -29.56576 -26.75369 -24.94655 -23.50995 -21.38454 -19.60874 -18.38213 -18.18509 -16.44085 -15.79204 -15.57922 -15.29912 -15.03175 -14.38319 -14.18760 -13.87715 -13.39383 -13.12720 -12.39614 -12.34761 -11.71298 -11.61104 -11.48927 -10.99991 -10.48196 -10.34991 -10.19370 -8.79685 -8.46221 -6.32641 0.52183 0.63471 1.47534 1.55264 1.73546 2.52132 2.74901 3.08661 3.13308 3.90767 4.10855 4.28002 4.38656 4.53948 4.69076 4.79925 4.94784 5.10400 5.16956 5.28347 5.56725 5.72121 5.87405 6.04712 6.12783 6.44118 6.60356 6.72540 7.42149 7.44801 8.66731 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047872 B = 0.012967 C = 0.011480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.749943 B = 2158.883397 C = 2438.439542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 H 0.036 0.964 4 C -0.588 4.588 5 H 0.014 0.986 6 C -0.023 4.023 7 N -0.941 5.941 8 Si 1.080 2.920 9 H -0.295 1.295 10 H -0.237 1.237 11 H -0.259 1.259 12 C -0.172 4.172 13 C -0.051 4.051 14 C -0.232 4.232 15 C 0.119 3.881 16 N -0.562 5.562 17 C 0.379 3.621 18 N -0.846 5.846 19 H 0.037 0.963 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.250 0.750 23 H 0.113 0.887 24 H 0.152 0.848 25 H 0.186 0.814 26 H 0.411 0.589 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 3.190 11.934 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.041 3.959 3 H 0.054 0.946 4 C -0.626 4.626 5 H 0.033 0.967 6 C -0.220 4.220 7 N -0.577 5.577 8 Si 0.901 3.099 9 H -0.221 1.221 10 H -0.161 1.161 11 H -0.184 1.184 12 C -0.178 4.178 13 C -0.077 4.077 14 C -0.255 4.255 15 C -0.037 4.037 16 N -0.280 5.280 17 C 0.142 3.858 18 N -0.394 5.394 19 H 0.056 0.944 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.059 0.941 23 H 0.131 0.869 24 H 0.170 0.830 25 H 0.203 0.797 26 H 0.244 0.756 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.921 4.770 11.462 12.449 hybrid contribution 0.312 -1.967 -0.151 1.997 sum -0.608 2.803 11.311 11.669 Atomic orbital electron populations 1.22141 0.96866 1.00610 1.00193 1.17846 0.93053 0.94957 0.90060 0.94643 1.22129 1.39176 1.08454 0.92855 0.96732 1.27268 0.94243 1.08677 0.91840 1.71000 1.44669 1.09182 1.32873 0.83662 0.79220 0.70660 0.76328 1.22113 1.16136 1.18352 1.20514 1.04254 0.95754 0.97319 1.21303 0.96188 0.93768 0.96436 1.22045 1.04762 1.02416 0.96243 1.22813 0.93866 0.88007 0.99005 1.67185 1.26807 1.12783 1.21255 1.18363 0.91259 0.87016 0.89161 1.42213 1.54635 1.05560 1.36990 0.94399 0.93166 0.92974 0.94141 0.86854 0.83013 0.79702 0.75639 0.76255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 8.71 71.98 0.63 -5.19 15 2 C 0.06 2.74 1.99 -12.29 -0.02 2.72 15 3 H 0.04 1.51 4.40 -2.39 -0.01 1.50 15 4 C -0.59 -32.80 8.46 25.60 0.22 -32.58 15 5 H 0.01 0.90 7.64 -2.91 -0.02 0.88 15 6 C -0.02 -1.31 5.34 84.66 0.45 -0.86 15 7 N -0.94 -58.71 13.69 21.45 0.29 -58.41 15 8 Si 1.08 47.71 26.40 68.60 1.81 49.52 15 9 H -0.29 -13.43 7.11 99.48 0.71 -12.73 15 10 H -0.24 -9.09 5.57 99.48 0.55 -8.54 15 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 12 C -0.17 -7.24 4.78 -19.63 -0.09 -7.33 15 13 C -0.05 -2.04 8.73 22.44 0.20 -1.85 15 14 C -0.23 -7.47 10.10 22.38 0.23 -7.25 15 15 C 0.12 3.66 11.17 84.63 0.95 4.60 15 16 N -0.56 -19.95 10.39 -193.25 -2.01 -21.96 15 17 C 0.38 14.42 7.73 133.05 1.03 15.45 15 18 N -0.85 -26.59 8.98 -55.44 -0.50 -27.08 15 19 H 0.04 1.60 7.82 -2.38 -0.02 1.58 15 20 H 0.05 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.05 2.16 4.84 -2.39 -0.01 2.15 15 22 H 0.25 15.91 8.73 -92.71 -0.81 15.10 15 23 H 0.11 4.76 7.88 -2.92 -0.02 4.74 15 24 H 0.15 3.82 8.06 -2.91 -0.02 3.79 15 25 H 0.19 4.01 8.06 -2.91 -0.02 3.99 15 26 H 0.41 12.38 6.52 -92.71 -0.60 11.77 15 27 H 0.41 10.56 8.95 -92.71 -0.83 9.73 15 Total: -1.00 -66.86 227.33 2.74 -64.11 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.43 Total: 26.12 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 3.57 Total: -32.29 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -2.21 Total: -107.46 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.81 Total: 49.52 kcal Total: -66.86 2.74 -64.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259949207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.986 kcal (2) G-P(sol) polarization free energy of solvation -66.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds