Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39785 * 125.89523 * 2 1 4 4 C 1.35318 * 108.00892 * 180.09080 * 3 2 1 5 5 N 1.35042 * 107.82125 * 359.76019 * 4 3 2 6 6 N 1.30705 * 125.89259 * 180.02562 * 2 1 3 7 7 C 1.47150 * 111.06321 * 180.29962 * 5 4 3 8 8 C 1.54377 * 105.56857 * 342.91464 * 7 5 4 9 9 C 1.51435 * 142.22093 * 179.85961 * 4 3 2 10 10 H 1.09002 * 110.48357 * 315.23337 * 9 4 3 11 11 C 1.50696 * 110.48223 * 77.74465 * 9 4 3 12 12 H 1.07997 * 120.00012 * 116.76028 * 11 9 4 13 13 C 1.37877 * 119.99842 * 296.75555 * 11 9 4 14 14 N 1.31516 * 120.00069 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99806 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 90.00621 * 15 13 11 17 17 H 1.48503 * 109.47399 * 210.00111 * 15 13 11 18 18 H 1.48498 * 109.47295 * 330.00717 * 15 13 11 19 19 H 1.09007 * 109.47000 * 270.02579 * 1 2 3 20 20 H 1.09008 * 109.46965 * 30.01527 * 1 2 3 21 21 H 1.08988 * 109.47622 * 150.02143 * 1 2 3 22 22 H 1.08006 * 126.05296 * 0.06854 * 3 2 1 23 23 H 1.08998 * 110.22457 * 223.89549 * 7 5 4 24 24 H 1.08997 * 110.29813 * 101.98080 * 7 5 4 25 25 H 1.08996 * 110.97469 * 267.60062 * 8 7 5 26 26 H 1.09001 * 110.96590 * 143.83255 * 8 7 5 27 27 H 0.97000 * 119.99838 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1324 0.0000 4 6 3.6143 0.7168 -0.0020 5 7 3.6128 -0.6336 0.0021 6 7 2.2733 -1.0589 -0.0005 7 6 4.9854 -1.1640 0.0074 8 6 5.8854 0.0112 -0.4308 9 6 5.0383 1.2321 -0.0057 10 1 5.1489 2.0425 -0.7261 11 6 5.4350 1.6952 1.3724 12 1 6.2365 1.1986 1.8991 13 6 4.7748 2.7529 1.9608 14 7 3.7985 3.3574 1.3196 15 14 5.2670 3.3275 3.6687 16 1 6.3191 4.3695 3.5563 17 1 4.0816 3.8937 4.3614 18 1 5.7916 2.1762 4.4463 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8899 -0.5141 21 1 -0.3634 -0.8901 -0.5134 22 1 1.9919 2.1593 0.0010 23 1 5.0731 -1.9895 -0.6990 24 1 5.2589 -1.4952 1.0091 25 1 6.0421 0.0016 -1.5093 26 1 6.8371 -0.0072 0.1004 27 1 3.5431 3.0592 0.4326 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259978245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = 75.366583 kcal Electronic energy + Delta-G solvation = -11981.738554 eV Core-core repulsion = 9934.165823 eV Total energy + Delta-G solvation = -2047.572731 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.67341 -35.89691 -33.03753 -30.48187 -29.06005 -27.33842 -25.70774 -23.49732 -20.73382 -19.46115 -18.50126 -16.92842 -15.31714 -14.91039 -13.82701 -13.60707 -13.25255 -12.94588 -12.55927 -12.07853 -11.92975 -11.73649 -11.49926 -11.00702 -10.69211 -10.60698 -10.21123 -10.00065 -9.66550 -8.99863 -8.46855 -7.96086 -7.38101 -6.43153 -4.21899 2.90595 3.22325 3.38863 3.43434 3.58369 3.81554 4.46963 5.02115 5.29968 5.47686 5.56211 5.66889 5.70568 5.95562 6.06735 6.16630 6.29378 6.31773 6.55549 6.68248 6.90092 7.03492 7.40361 7.72175 7.81299 7.96600 8.29818 8.74505 8.80284 9.52930 10.94223 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.015485 C = 0.012124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.884582 B = 1807.740861 C = 2308.861565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.060 3.940 3 C -0.275 4.275 4 C 0.118 3.882 5 N -0.406 5.406 6 N -0.311 5.311 7 C 0.146 3.854 8 C -0.123 4.123 9 C 0.078 3.922 10 H 0.043 0.957 11 C -0.600 4.600 12 H 0.057 0.943 13 C 0.027 3.973 14 N -0.893 5.893 15 Si 1.071 2.929 16 H -0.286 1.286 17 H -0.283 1.283 18 H -0.290 1.290 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.063 0.937 22 H 0.141 0.859 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.091 0.909 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -4.405 -2.323 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.303 4.303 4 C -0.011 4.011 5 N -0.189 5.189 6 N -0.134 5.134 7 C 0.025 3.975 8 C -0.161 4.161 9 C 0.058 3.942 10 H 0.061 0.939 11 C -0.637 4.637 12 H 0.076 0.924 13 C -0.181 4.181 14 N -0.527 5.527 15 Si 0.899 3.101 16 H -0.212 1.212 17 H -0.209 1.209 18 H -0.216 1.216 19 H 0.088 0.912 20 H 0.091 0.909 21 H 0.082 0.918 22 H 0.159 0.841 23 H 0.089 0.911 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.373 -4.812 -1.158 4.963 hybrid contribution 0.315 -0.331 -1.013 1.111 sum -0.058 -5.142 -2.171 5.582 Atomic orbital electron populations 1.20021 0.87432 1.02215 1.02216 1.22168 0.96181 0.91230 1.00925 1.20526 0.90378 0.99049 1.20396 1.23314 0.98218 0.85554 0.93979 1.49981 1.03830 1.06902 1.58174 1.76991 0.84774 1.22606 1.28992 1.22063 0.76290 0.97357 1.01797 1.22750 0.98830 0.94468 1.00062 1.18365 0.83926 0.92860 0.99073 0.93892 1.21781 1.21585 1.19340 1.01036 0.92436 1.25823 0.93799 0.93667 1.04828 1.70719 1.25977 1.40728 1.15308 0.83509 0.76102 0.75832 0.74645 1.21240 1.20868 1.21573 0.91232 0.90913 0.91838 0.84125 0.91123 0.90536 0.91852 0.89051 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.00 10.45 36.01 0.38 -0.62 15 2 C 0.06 1.36 7.21 -82.49 -0.59 0.76 15 3 C -0.27 -6.81 9.57 -40.04 -0.38 -7.19 15 4 C 0.12 2.98 5.94 -81.86 -0.49 2.50 15 5 N -0.41 -9.66 4.86 -55.69 -0.27 -9.93 15 6 N -0.31 -7.41 12.70 33.63 0.43 -6.98 15 7 C 0.15 2.84 7.77 -2.97 -0.02 2.82 15 8 C -0.12 -2.36 6.69 -25.19 -0.17 -2.53 15 9 C 0.08 1.92 2.50 -91.75 -0.23 1.69 15 10 H 0.04 1.10 8.00 -51.93 -0.42 0.68 15 11 C -0.60 -16.17 8.53 -34.44 -0.29 -16.47 15 12 H 0.06 1.51 7.58 -52.49 -0.40 1.12 15 13 C 0.03 0.74 5.33 -17.82 -0.10 0.64 15 14 N -0.89 -26.02 13.12 55.43 0.73 -25.29 15 15 Si 1.07 24.73 29.90 -169.99 -5.08 19.65 15 16 H -0.29 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 15 19 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.07 1.07 8.14 -51.92 -0.42 0.65 15 21 H 0.06 0.94 8.14 -51.94 -0.42 0.52 15 22 H 0.14 3.51 6.81 -52.48 -0.36 3.15 15 23 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 24 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.09 1.62 7.74 -51.93 -0.40 1.22 15 27 H 0.28 8.05 4.46 -40.82 -0.18 7.87 15 LS Contribution 229.34 15.07 3.46 3.46 Total: -1.00 -31.61 229.34 -5.73 -37.34 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.09 Total: 0.16 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -1.90 Total: -18.40 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.88 Total: -42.21 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.61 -5.73 -37.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.705 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds