Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39785 * 125.89523 * 2 1 4 4 C 1.35318 * 108.00892 * 180.09080 * 3 2 1 5 5 N 1.35042 * 107.82125 * 359.76019 * 4 3 2 6 6 N 1.30705 * 125.89259 * 180.02562 * 2 1 3 7 7 C 1.47150 * 111.06321 * 180.29962 * 5 4 3 8 8 C 1.54377 * 105.56857 * 342.91464 * 7 5 4 9 9 C 1.51435 * 142.22093 * 179.85961 * 4 3 2 10 10 H 1.09002 * 110.48357 * 315.23337 * 9 4 3 11 11 C 1.50696 * 110.48223 * 77.74465 * 9 4 3 12 12 H 1.07997 * 120.00012 * 116.76028 * 11 9 4 13 13 C 1.37877 * 119.99842 * 296.75555 * 11 9 4 14 14 N 1.31516 * 120.00069 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99806 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46845 * 90.00621 * 15 13 11 17 17 H 1.48503 * 109.47399 * 210.00111 * 15 13 11 18 18 H 1.48498 * 109.47295 * 330.00717 * 15 13 11 19 19 H 1.09007 * 109.47000 * 270.02579 * 1 2 3 20 20 H 1.09008 * 109.46965 * 30.01527 * 1 2 3 21 21 H 1.08988 * 109.47622 * 150.02143 * 1 2 3 22 22 H 1.08006 * 126.05296 * 0.06854 * 3 2 1 23 23 H 1.08998 * 110.22457 * 223.89549 * 7 5 4 24 24 H 1.08997 * 110.29813 * 101.98080 * 7 5 4 25 25 H 1.08996 * 110.97469 * 267.60062 * 8 7 5 26 26 H 1.09001 * 110.96590 * 143.83255 * 8 7 5 27 27 H 0.97000 * 119.99838 * 359.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3266 1.1324 0.0000 4 6 3.6143 0.7168 -0.0020 5 7 3.6128 -0.6336 0.0021 6 7 2.2733 -1.0589 -0.0005 7 6 4.9854 -1.1640 0.0074 8 6 5.8854 0.0112 -0.4308 9 6 5.0383 1.2321 -0.0057 10 1 5.1489 2.0425 -0.7261 11 6 5.4350 1.6952 1.3724 12 1 6.2365 1.1986 1.8991 13 6 4.7748 2.7529 1.9608 14 7 3.7985 3.3574 1.3196 15 14 5.2670 3.3275 3.6687 16 1 6.3191 4.3695 3.5563 17 1 4.0816 3.8937 4.3614 18 1 5.7916 2.1762 4.4463 19 1 -0.3633 0.0005 1.0277 20 1 -0.3633 0.8899 -0.5141 21 1 -0.3634 -0.8901 -0.5134 22 1 1.9919 2.1593 0.0010 23 1 5.0731 -1.9895 -0.6990 24 1 5.2589 -1.4952 1.0091 25 1 6.0421 0.0016 -1.5093 26 1 6.8371 -0.0072 0.1004 27 1 3.5431 3.0592 0.4326 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = 55.199322 kcal Electronic energy + Delta-G solvation = -11982.613072 eV Core-core repulsion = 9934.165823 eV Total energy + Delta-G solvation = -2048.447249 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.45750 -37.63720 -35.00763 -32.08597 -30.86428 -29.10852 -27.41295 -25.43601 -22.42106 -21.31213 -20.23134 -18.89165 -17.11215 -16.64214 -15.65628 -15.34039 -14.96425 -14.49947 -14.29725 -13.81764 -13.55715 -13.29655 -13.16208 -12.75011 -12.41863 -12.21577 -12.00632 -11.81112 -11.46595 -10.93826 -10.53881 -9.73265 -9.26340 -8.57886 -6.37621 1.08853 1.53395 1.57720 1.62344 1.77831 1.97085 2.57177 3.15489 3.48127 3.94035 3.99340 4.03235 4.22964 4.45748 4.58611 4.77287 4.79268 4.80580 4.96974 5.09504 5.12671 5.17949 5.54165 5.89081 5.95126 6.03655 6.23964 6.60584 7.00338 7.45169 8.79442 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.035848 B = 0.015485 C = 0.012124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.884582 B = 1807.740861 C = 2308.861565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.062 3.938 3 C -0.300 4.300 4 C 0.095 3.905 5 N -0.413 5.413 6 N -0.326 5.326 7 C 0.138 3.862 8 C -0.109 4.109 9 C 0.065 3.935 10 H 0.022 0.978 11 C -0.608 4.608 12 H 0.061 0.939 13 C -0.025 4.025 14 N -0.921 5.921 15 Si 1.114 2.886 16 H -0.268 1.268 17 H -0.290 1.290 18 H -0.275 1.275 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.084 0.916 22 H 0.128 0.872 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.108 0.892 27 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -5.520 -2.059 5.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.104 4.104 3 C -0.329 4.329 4 C -0.034 4.034 5 N -0.196 5.196 6 N -0.149 5.149 7 C 0.019 3.981 8 C -0.147 4.147 9 C 0.044 3.956 10 H 0.039 0.961 11 C -0.646 4.646 12 H 0.079 0.921 13 C -0.227 4.227 14 N -0.557 5.557 15 Si 0.937 3.063 16 H -0.193 1.193 17 H -0.216 1.216 18 H -0.200 1.200 19 H 0.101 0.899 20 H 0.109 0.891 21 H 0.103 0.897 22 H 0.146 0.854 23 H 0.124 0.876 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.126 0.874 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.007 -5.951 -0.911 6.021 hybrid contribution 0.201 0.008 -1.145 1.163 sum 0.208 -5.944 -2.057 6.293 Atomic orbital electron populations 1.20220 0.83609 1.04204 1.03638 1.22940 0.98562 0.89784 0.99119 1.20695 0.91296 0.99322 1.21623 1.23432 0.98524 0.86723 0.94730 1.50361 1.04920 1.06486 1.57802 1.76933 0.85096 1.23254 1.29585 1.22392 0.74299 0.98289 1.03169 1.22738 0.98533 0.91590 1.01877 1.18420 0.85032 0.94500 0.97625 0.96057 1.22140 1.21273 1.19105 1.02076 0.92067 1.27156 0.93488 0.94205 1.07832 1.70806 1.27527 1.41900 1.15429 0.82958 0.76052 0.76362 0.70978 1.19304 1.21590 1.20045 0.89927 0.89125 0.89683 0.85442 0.87557 0.90135 0.89341 0.87412 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 10.45 71.24 0.74 -1.07 15 2 C 0.06 2.71 7.21 43.10 0.31 3.02 15 3 C -0.30 -15.09 9.57 21.97 0.21 -14.88 15 4 C 0.10 4.84 5.94 41.62 0.25 5.09 15 5 N -0.41 -19.17 4.86 -330.11 -1.60 -20.78 15 6 N -0.33 -15.13 12.70 -47.50 -0.60 -15.74 15 7 C 0.14 5.05 7.77 86.72 0.67 5.73 15 8 C -0.11 -3.98 6.69 31.59 0.21 -3.77 15 9 C 0.06 3.17 2.50 -11.53 -0.03 3.15 15 10 H 0.02 1.13 8.00 -2.39 -0.02 1.11 15 11 C -0.61 -32.69 8.53 25.60 0.22 -32.47 15 12 H 0.06 3.16 7.58 -2.91 -0.02 3.14 15 13 C -0.02 -1.39 5.33 84.65 0.45 -0.94 15 14 N -0.92 -54.77 13.12 21.45 0.28 -54.49 15 15 Si 1.11 49.45 29.90 68.60 2.05 51.50 15 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 17 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 18 H -0.28 -11.45 7.11 99.48 0.71 -10.74 15 19 H 0.08 2.38 8.14 -2.38 -0.02 2.37 15 20 H 0.09 2.48 8.14 -2.38 -0.02 2.47 15 21 H 0.08 2.29 8.14 -2.39 -0.02 2.27 15 22 H 0.13 6.61 6.81 -2.91 -0.02 6.59 15 23 H 0.11 3.12 8.14 -2.39 -0.02 3.10 15 24 H 0.08 2.86 8.14 -2.39 -0.02 2.85 15 25 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.11 3.55 7.74 -2.39 -0.02 3.53 15 27 H 0.27 16.16 4.46 -92.71 -0.41 15.75 15 Total: -1.00 -67.85 229.34 4.68 -63.17 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.51 Total: 12.47 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 3.04 Total: -36.14 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -1.93 Total: -91.00 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.05 Total: 51.50 kcal Total: -67.85 4.68 -63.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.370 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds