Wall clock time and date at job start Mon Mar 30 2020 01:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86795 * 120.00220 * 2 1 4 4 H 1.48500 * 109.47176 * 269.99715 * 3 2 1 5 5 H 1.48503 * 109.47277 * 29.99575 * 3 2 1 6 6 H 1.48507 * 109.47428 * 149.99700 * 3 2 1 7 7 C 1.37882 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00131 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99560 * 0.02562 * 7 2 1 10 10 C 1.50702 * 109.46990 * 179.97438 * 9 7 2 11 11 C 1.34564 * 126.58406 * 85.02362 * 10 9 7 12 12 N 1.34005 * 108.03308 * 179.77327 * 11 10 9 13 13 C 1.30912 * 109.30162 * 0.09870 * 12 11 10 14 14 N 1.34814 * 108.60788 * 359.80826 * 13 12 11 15 15 C 1.47010 * 111.17740 * 180.29258 * 14 13 12 16 16 C 1.54389 * 105.52637 * 342.86364 * 15 14 13 17 17 C 1.51562 * 141.44570 * 179.77947 * 13 12 11 18 18 H 0.97006 * 120.00100 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.47463 * 60.00057 * 9 7 2 20 20 H 1.08999 * 109.47281 * 299.99455 * 9 7 2 21 21 H 1.08001 * 125.98226 * 359.79776 * 11 10 9 22 22 H 1.08997 * 110.23147 * 223.85015 * 15 14 13 23 23 H 1.08998 * 110.23536 * 101.87987 * 15 14 13 24 24 H 1.09000 * 110.96733 * 267.60540 * 16 15 14 25 25 H 1.09006 * 110.99713 * 143.86294 * 16 15 14 26 26 H 1.09002 * 110.47688 * 315.24669 * 17 13 12 27 27 H 1.09002 * 110.47368 * 77.72549 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.8225 -4.1934 1.0770 12 7 3.6161 -5.1863 0.6527 13 6 3.5402 -5.2738 -0.6513 14 7 2.6843 -4.3321 -1.0965 15 6 2.5510 -4.3847 -2.5596 16 6 3.7637 -5.2011 -3.0560 17 6 4.0861 -6.0702 -1.8195 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5567 0.8903 21 1 2.6826 -3.8873 2.1032 22 1 2.5778 -3.3781 -2.9769 23 1 1.6220 -4.8835 -2.8358 24 1 4.6001 -4.5469 -3.3018 25 1 3.4931 -5.8225 -3.9097 26 1 5.1630 -6.2054 -1.7188 27 1 3.5863 -7.0363 -1.8891 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259997628.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:34 Heat of formation + Delta-G solvation = 56.317876 kcal Electronic energy + Delta-G solvation = -11613.818836 eV Core-core repulsion = 9565.420092 eV Total energy + Delta-G solvation = -2048.398745 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.67370 -35.91994 -33.40916 -31.43511 -29.47583 -27.41739 -25.77832 -22.89203 -21.71599 -19.76119 -18.87336 -16.49479 -16.17666 -15.10809 -14.40152 -13.80823 -13.45202 -13.38445 -12.98707 -12.35111 -12.02474 -11.69538 -11.51285 -11.33311 -10.93468 -10.78007 -10.72799 -9.96739 -9.53445 -9.08948 -8.77383 -8.48143 -7.28213 -6.09789 -4.14831 2.87234 3.26547 3.33396 3.38783 3.46270 3.90213 4.30017 4.40522 4.72671 4.89473 5.05069 5.24328 5.58075 5.62466 5.73687 5.84329 5.98100 6.05554 6.37877 6.58796 6.98526 7.38063 7.65910 7.69491 7.84332 7.85130 8.24614 8.88491 8.89771 9.49665 10.99158 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050471 B = 0.010147 C = 0.009589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.643409 B = 2758.839398 C = 2919.165447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.083 3.917 10 C 0.061 3.939 11 C -0.055 4.055 12 N -0.484 5.484 13 C 0.139 3.861 14 N -0.476 5.476 15 C 0.105 3.895 16 C -0.129 4.129 17 C -0.031 4.031 18 H 0.263 0.737 19 H 0.023 0.977 20 H 0.044 0.956 21 H 0.168 0.832 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 -8.279 -6.654 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.053 4.053 11 C -0.201 4.201 12 N -0.204 5.204 13 C -0.122 4.122 14 N -0.162 5.162 15 C -0.017 4.017 16 C -0.167 4.167 17 C -0.070 4.070 18 H 0.073 0.927 19 H 0.041 0.959 20 H 0.062 0.938 21 H 0.185 0.815 22 H 0.109 0.891 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.016 -8.514 -6.257 11.697 hybrid contribution -0.148 1.588 -0.449 1.657 sum 4.868 -6.926 -6.707 10.800 Atomic orbital electron populations 1.69949 1.06041 1.26987 1.50326 1.25000 0.94894 0.99300 0.95026 0.86501 0.79939 0.82961 0.78131 1.20672 1.20997 1.19692 1.21059 0.93115 0.89785 1.51271 0.92480 1.17849 0.91340 0.87734 0.98591 1.22093 1.02064 0.97385 0.83783 1.21868 1.01615 0.97962 0.98652 1.69680 1.22737 1.20674 1.07294 1.23958 0.99623 0.96561 0.92048 1.46225 1.35421 1.27669 1.06852 1.22193 0.99265 1.02487 0.77793 1.22702 0.97813 0.98489 0.97723 1.20453 1.01752 0.96928 0.87895 0.92723 0.95888 0.93756 0.81523 0.89133 0.90067 0.89817 0.88754 0.89432 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 15 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 15 7 C -0.51 -14.58 9.09 -34.44 -0.31 -14.89 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 9 C 0.08 2.19 5.53 -29.03 -0.16 2.02 15 10 C 0.06 1.44 6.43 -81.49 -0.52 0.92 15 11 C -0.06 -1.28 11.78 -17.90 -0.21 -1.49 15 12 N -0.48 -10.81 11.26 -10.56 -0.12 -10.93 15 13 C 0.14 2.71 8.58 -154.86 -1.33 1.39 15 14 N -0.48 -9.72 3.61 -107.74 -0.39 -10.11 15 15 C 0.10 1.58 7.78 -3.04 -0.02 1.56 15 16 C -0.13 -1.41 7.17 -25.20 -0.18 -1.59 15 17 C -0.03 -0.40 6.86 -26.66 -0.18 -0.59 15 18 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 19 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 20 H 0.04 1.21 8.14 -51.93 -0.42 0.79 15 21 H 0.17 3.58 8.06 -52.49 -0.42 3.16 15 22 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 25 H 0.09 0.71 8.14 -51.93 -0.42 0.29 15 26 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 15 LS Contribution 236.94 15.07 3.57 3.57 Total: -1.00 -32.74 236.94 -7.59 -40.33 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -3.35 Total: -2.82 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.02 Total: -11.09 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.23 Total: -46.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.74 -7.59 -40.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997628.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.647 kcal (2) G-P(sol) polarization free energy of solvation -32.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds