Wall clock time and date at job start Mon Mar 30 2020 02:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47410 * 2 1 4 4 C 1.50707 * 109.46886 * 120.00274 * 2 1 3 5 5 H 1.07992 * 119.99911 * 120.00041 * 4 2 1 6 6 C 1.37873 * 119.99622 * 299.99323 * 4 2 1 7 7 N 1.31518 * 120.00509 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99813 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47272 * 60.00506 * 8 6 4 10 10 H 1.48498 * 109.47268 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47189 * 300.00327 * 8 6 4 12 12 N 1.46499 * 109.46992 * 239.99911 * 2 1 3 13 13 C 1.39000 * 119.99990 * 85.00360 * 12 2 1 14 14 C 1.39132 * 119.70621 * 359.97438 * 13 12 2 15 15 C 1.38299 * 119.09502 * 179.76799 * 14 13 12 16 16 C 1.38878 * 118.50866 * 0.50109 * 15 14 13 17 17 C 1.38026 * 119.32952 * 359.49639 * 16 15 14 18 18 N 1.31973 * 120.85361 * 0.25965 * 17 16 15 19 19 H 1.08998 * 109.46644 * 60.00094 * 1 2 3 20 20 H 1.08999 * 109.46984 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46809 * 299.99942 * 1 2 3 22 22 H 0.96997 * 120.00009 * 179.97438 * 7 6 4 23 23 H 0.97000 * 119.99829 * 265.00414 * 12 2 1 24 24 H 1.08002 * 120.45241 * 0.02562 * 14 13 12 25 25 H 1.08002 * 120.74357 * 180.24999 * 15 14 13 26 26 H 1.08002 * 120.34021 * 179.78218 * 16 15 14 27 27 H 1.07993 * 119.57511 * 180.23529 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8075 -1.1191 4.0078 10 1 1.8269 -0.4199 5.2204 11 1 1.8279 -2.5198 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 2.1511 0.0028 -2.3935 14 6 1.8181 1.3525 -2.4492 15 6 1.9596 2.0313 -3.6458 16 6 2.4214 1.3326 -4.7536 17 6 2.7332 -0.0060 -4.6269 18 7 2.5930 -0.6272 -3.4710 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.7083 1.1609 3.4844 23 1 2.2490 -1.6318 -1.1526 24 1 1.4578 1.8642 -1.5689 25 1 1.7128 3.0802 -3.7181 26 1 2.5397 1.8326 -5.7036 27 1 3.0962 -0.5523 -5.4849 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260006033.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:36 Heat of formation + Delta-G solvation = 32.433348 kcal Electronic energy + Delta-G solvation = -11488.829588 eV Core-core repulsion = 9439.395132 eV Total energy + Delta-G solvation = -2049.434456 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.48648 -35.81566 -32.82917 -31.78049 -29.82150 -27.68857 -25.30523 -23.04191 -22.18413 -20.20964 -17.42367 -16.38155 -15.62890 -15.15441 -14.64911 -13.90528 -13.62976 -13.33656 -12.49090 -12.39102 -11.91588 -11.39560 -11.20403 -11.03976 -10.77336 -10.34600 -10.23926 -9.58590 -9.14335 -9.12333 -8.83640 -8.53283 -6.82262 -6.20034 -4.28102 1.88474 2.07345 3.23778 3.28329 3.30769 4.10323 4.37643 4.55253 5.13054 5.22222 5.34894 5.72825 5.82361 5.99893 6.33865 6.58019 6.65133 6.85773 6.87377 6.98215 7.15995 7.41012 7.62955 7.75888 7.94187 8.09360 8.64562 8.69694 8.98985 9.39628 10.86168 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.072730 B = 0.008885 C = 0.008412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.891203 B = 3150.581025 C = 3327.661111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.270 3.730 3 H 0.042 0.958 4 C -0.532 4.532 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.700 5.700 13 C 0.413 3.587 14 C -0.242 4.242 15 C -0.038 4.038 16 C -0.266 4.266 17 C 0.144 3.856 18 N -0.565 5.565 19 H 0.013 0.987 20 H 0.031 0.969 21 H 0.092 0.908 22 H 0.266 0.734 23 H 0.395 0.605 24 H 0.135 0.865 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 1.228 -8.209 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.167 3.833 3 H 0.060 0.940 4 C -0.570 4.570 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.325 5.325 13 C 0.174 3.826 14 C -0.267 4.267 15 C -0.064 4.064 16 C -0.290 4.290 17 C -0.014 4.014 18 N -0.284 5.284 19 H 0.032 0.968 20 H 0.050 0.950 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.229 0.771 24 H 0.153 0.847 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.950 0.579 -7.736 7.816 hybrid contribution 0.145 0.146 0.768 0.795 sum 1.095 0.725 -6.968 7.091 Atomic orbital electron populations 1.22201 0.98520 0.99802 1.00697 1.18817 0.90851 0.93456 0.80164 0.93989 1.21158 1.32375 1.13381 0.90084 0.91964 1.24865 0.94707 0.94967 0.99069 1.69860 1.35929 1.22547 1.24148 0.86459 0.79231 0.79647 0.81526 1.20105 1.21087 1.20094 1.45495 1.67695 1.12712 1.06602 1.18664 0.88448 0.88796 0.86679 1.21559 1.10649 0.94672 0.99858 1.21212 0.93910 0.99138 0.92153 1.21549 1.11293 0.96555 0.99585 1.22211 0.93561 0.91829 0.93815 1.67230 1.21944 1.39863 0.99375 0.96769 0.95022 0.88945 0.92446 0.77138 0.84746 0.85963 0.86301 0.83916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.18 37.16 0.34 -3.30 15 2 C 0.27 6.61 2.25 -69.08 -0.16 6.46 15 3 H 0.04 1.11 6.45 -51.93 -0.33 0.77 15 4 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 15 5 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 15 7 N -0.89 -24.12 11.32 55.43 0.63 -23.50 15 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 15 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 12 N -0.70 -15.56 5.24 -55.05 -0.29 -15.85 15 13 C 0.41 8.67 7.63 -155.02 -1.18 7.49 15 14 C -0.24 -4.70 8.83 -39.23 -0.35 -5.05 15 15 C -0.04 -0.62 10.17 -39.32 -0.40 -1.02 15 16 C -0.27 -3.98 10.10 -39.42 -0.40 -4.38 15 17 C 0.14 2.34 11.17 -17.57 -0.20 2.15 15 18 N -0.56 -11.13 10.39 -12.44 -0.13 -11.26 15 19 H 0.01 0.30 7.66 -51.93 -0.40 -0.10 15 20 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 21 H 0.09 2.36 6.07 -51.93 -0.32 2.05 15 22 H 0.27 6.89 8.31 -40.82 -0.34 6.55 15 23 H 0.39 8.52 8.66 -40.82 -0.35 8.17 15 24 H 0.13 2.71 6.07 -52.49 -0.32 2.39 15 25 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.14 1.80 8.06 -52.49 -0.42 1.38 15 LS Contribution 234.45 15.07 3.53 3.53 Total: -1.00 -27.69 234.45 -6.96 -34.65 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -2.95 Total: 7.21 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -2.73 Total: -10.35 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.21 Total: -50.60 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -27.69 -6.96 -34.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260006033.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.086 kcal (2) G-P(sol) polarization free energy of solvation -27.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds