Wall clock time and date at job start Mon Mar 30 2020 02:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08997 * 115.54406 * 34.41161 * 9 7 2 11 11 C 1.52936 * 117.48703 * 248.78834 * 9 7 2 12 12 C 1.53309 * 117.48639 * 180.02562 * 9 7 2 13 13 C 1.52397 * 117.31053 * 0.30999 * 12 9 7 14 14 C 1.51359 * 111.86541 * 172.50651 * 13 12 9 15 15 C 1.51172 * 113.39436 * 59.74695 * 14 13 12 16 16 C 1.52011 * 113.08249 * 310.94697 * 15 14 13 17 17 H 1.08995 * 115.36628 * 233.54826 * 16 15 14 18 18 C 1.53686 * 116.34575 * 90.57455 * 16 15 14 19 19 C 1.52272 * 120.49744 * 21.78698 * 16 15 14 20 20 H 1.09001 * 116.58384 * 210.71278 * 19 16 15 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09002 * 117.49219 * 0.02562 * 11 9 7 23 23 H 1.09001 * 117.48804 * 144.97205 * 11 9 7 24 24 H 1.09000 * 109.00543 * 293.11887 * 13 12 9 25 25 H 1.08999 * 109.00688 * 51.89292 * 13 12 9 26 26 H 1.09002 * 108.70500 * 180.75834 * 14 13 12 27 27 H 1.08997 * 108.70071 * 298.86731 * 14 13 12 28 28 H 1.09007 * 108.76066 * 71.87850 * 15 14 13 29 29 H 1.09005 * 108.76529 * 190.13427 * 15 14 13 30 30 H 1.08998 * 117.52827 * 355.90143 * 18 16 15 31 31 H 1.09001 * 117.52950 * 141.03336 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.9814 -0.3825 0.5569 11 6 4.2180 -1.6851 -1.2633 12 6 4.2193 -2.5540 0.0011 13 6 3.3408 -3.7993 -0.0069 14 6 4.1549 -5.0622 -0.1893 15 6 5.1843 -5.2749 0.8972 16 6 6.0327 -4.0422 1.1640 17 1 7.1104 -4.1977 1.1161 18 6 5.5108 -3.0744 2.2377 19 6 5.5304 -2.6589 0.7729 20 1 6.2876 -1.9248 0.4975 21 1 -0.4850 0.8400 -0.0004 22 1 3.5928 -2.0079 -2.0958 23 1 5.1527 -1.1970 -1.5392 24 1 2.8006 -3.8586 0.9380 25 1 2.6207 -3.7205 -0.8213 26 1 3.4775 -5.9161 -0.2008 27 1 4.6683 -5.0114 -1.1494 28 1 4.6704 -5.5528 1.8175 29 1 5.8412 -6.0934 0.6024 30 1 4.5420 -3.2943 2.6861 31 1 6.2435 -2.6163 2.9021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260039667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:13 Heat of formation + Delta-G solvation = 28.260175 kcal Electronic energy + Delta-G solvation = -12110.741410 eV Core-core repulsion = 10164.666336 eV Total energy + Delta-G solvation = -1946.075075 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.24475 -35.35502 -32.64453 -32.10762 -27.50594 -25.72570 -22.44190 -22.18284 -20.71804 -19.48880 -16.94022 -16.69246 -15.69701 -14.49549 -14.20068 -13.49067 -13.09318 -12.81974 -12.60938 -12.24088 -11.70294 -11.12618 -11.08727 -10.85575 -10.71525 -10.55783 -10.07167 -9.82112 -9.71161 -9.60960 -9.10073 -8.99552 -8.42277 -8.05260 -6.08304 -4.03872 3.32245 3.38684 3.41030 4.13775 4.43554 4.80765 5.07833 5.21337 5.27794 5.43786 5.57938 5.69709 5.77345 5.89668 5.99056 6.16434 6.21195 6.23706 6.33607 6.38812 6.50992 6.59938 6.67072 6.76795 6.84782 6.97770 7.04612 7.30088 7.34543 7.78509 8.56462 8.96484 9.54706 11.03424 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.051479 B = 0.011501 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.781191 B = 2434.007937 C = 2651.231908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.290 1.290 7 C -0.483 4.483 8 H 0.080 0.920 9 C -0.007 4.007 10 H 0.070 0.930 11 C -0.204 4.204 12 C -0.112 4.112 13 C -0.064 4.064 14 C -0.114 4.114 15 C -0.080 4.080 16 C -0.156 4.156 17 H 0.092 0.908 18 C -0.180 4.180 19 C -0.087 4.087 20 H 0.090 0.910 21 H 0.264 0.736 22 H 0.083 0.917 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -6.268 1.365 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.216 1.216 7 C -0.520 4.520 8 H 0.098 0.902 9 C -0.026 4.026 10 H 0.087 0.913 11 C -0.242 4.242 12 C -0.112 4.112 13 C -0.101 4.101 14 C -0.151 4.151 15 C -0.118 4.118 16 C -0.175 4.175 17 H 0.110 0.890 18 C -0.217 4.217 19 C -0.105 4.105 20 H 0.108 0.892 21 H 0.074 0.926 22 H 0.102 0.898 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.114 0.886 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.951 -6.153 1.372 11.780 hybrid contribution 0.515 0.941 -0.058 1.075 sum 10.466 -5.212 1.314 11.766 Atomic orbital electron populations 1.69902 1.06322 1.27089 1.50367 1.25016 0.94668 0.99192 0.94131 0.86732 0.80242 0.83334 0.78596 1.20253 1.18915 1.21596 1.20611 0.87433 0.94584 1.49369 0.90235 1.20542 0.95236 0.91805 0.95027 0.91261 1.23368 1.01705 1.06176 0.92962 1.20518 0.95258 0.94208 1.01264 1.20338 0.96502 0.91150 1.02154 1.20794 0.97460 0.98311 0.98567 1.20426 0.96747 0.95516 0.99094 1.22045 0.98387 0.91688 1.05343 0.89003 1.23048 1.02348 1.04222 0.92073 1.21287 0.97572 0.95751 0.95905 0.89220 0.92578 0.89844 0.91728 0.92498 0.91422 0.92815 0.92820 0.92438 0.92606 0.88643 0.89737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.70 27.75 -169.99 -4.72 16.98 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.26 -6.24 6.03 56.52 0.34 -5.90 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.48 -13.52 9.23 -34.44 -0.32 -13.83 16 8 H 0.08 2.38 6.73 -52.49 -0.35 2.02 16 9 C -0.01 -0.18 4.52 -91.65 -0.41 -0.59 16 10 H 0.07 1.69 5.91 -51.93 -0.31 1.39 16 11 C -0.20 -4.38 9.57 -26.55 -0.25 -4.63 16 12 C -0.11 -2.30 2.28 -154.70 -0.35 -2.65 16 13 C -0.06 -1.25 4.17 -27.87 -0.12 -1.37 16 14 C -0.11 -1.80 5.71 -28.48 -0.16 -1.96 16 15 C -0.08 -1.15 5.77 -28.16 -0.16 -1.31 16 16 C -0.16 -2.36 6.19 -91.14 -0.56 -2.92 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 18 C -0.18 -2.88 9.85 -26.74 -0.26 -3.14 16 19 C -0.09 -1.54 5.55 -91.62 -0.51 -2.05 16 20 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 21 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 22 H 0.08 1.83 8.08 -51.93 -0.42 1.41 16 23 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 25 H 0.07 1.42 7.31 -51.93 -0.38 1.04 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.80 8.04 -51.93 -0.42 0.39 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 247.91 15.07 3.74 3.74 Total: -1.00 -28.96 247.91 -8.30 -37.26 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.88 Total: 1.04 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -3.21 Total: -32.49 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.77 Total: -26.52 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.72 Total: 16.98 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -28.96 -8.30 -37.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.517 kcal (2) G-P(sol) polarization free energy of solvation -28.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds