Wall clock time and date at job start Mon Mar 30 2020 02:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08997 * 115.54406 * 34.41161 * 9 7 2 11 11 C 1.52936 * 117.48703 * 248.78834 * 9 7 2 12 12 C 1.53309 * 117.48639 * 180.02562 * 9 7 2 13 13 C 1.52397 * 117.31053 * 0.30999 * 12 9 7 14 14 C 1.51359 * 111.86541 * 172.50651 * 13 12 9 15 15 C 1.51172 * 113.39436 * 59.74695 * 14 13 12 16 16 C 1.52011 * 113.08249 * 310.94697 * 15 14 13 17 17 H 1.08995 * 115.36628 * 233.54826 * 16 15 14 18 18 C 1.53686 * 116.34575 * 90.57455 * 16 15 14 19 19 C 1.52272 * 120.49744 * 21.78698 * 16 15 14 20 20 H 1.09001 * 116.58384 * 210.71278 * 19 16 15 21 21 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 22 22 H 1.09002 * 117.49219 * 0.02562 * 11 9 7 23 23 H 1.09001 * 117.48804 * 144.97205 * 11 9 7 24 24 H 1.09000 * 109.00543 * 293.11887 * 13 12 9 25 25 H 1.08999 * 109.00688 * 51.89292 * 13 12 9 26 26 H 1.09002 * 108.70500 * 180.75834 * 14 13 12 27 27 H 1.08997 * 108.70071 * 298.86731 * 14 13 12 28 28 H 1.09007 * 108.76066 * 71.87850 * 15 14 13 29 29 H 1.09005 * 108.76529 * 190.13427 * 15 14 13 30 30 H 1.08998 * 117.52827 * 355.90143 * 18 16 15 31 31 H 1.09001 * 117.52950 * 141.03336 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.9814 -0.3825 0.5569 11 6 4.2180 -1.6851 -1.2633 12 6 4.2193 -2.5540 0.0011 13 6 3.3408 -3.7993 -0.0069 14 6 4.1549 -5.0622 -0.1893 15 6 5.1843 -5.2749 0.8972 16 6 6.0327 -4.0422 1.1640 17 1 7.1104 -4.1977 1.1161 18 6 5.5108 -3.0744 2.2377 19 6 5.5304 -2.6589 0.7729 20 1 6.2876 -1.9248 0.4975 21 1 -0.4850 0.8400 -0.0004 22 1 3.5928 -2.0079 -2.0958 23 1 5.1527 -1.1970 -1.5392 24 1 2.8006 -3.8586 0.9380 25 1 2.6207 -3.7205 -0.8213 26 1 3.4775 -5.9161 -0.2008 27 1 4.6683 -5.0114 -1.1494 28 1 4.6704 -5.5528 1.8175 29 1 5.8412 -6.0934 0.6024 30 1 4.5420 -3.2943 2.6861 31 1 6.2435 -2.6163 2.9021 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260039667.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:12 Heat of formation + Delta-G solvation = 12.762295 kcal Electronic energy + Delta-G solvation = -12111.413449 eV Core-core repulsion = 10164.666336 eV Total energy + Delta-G solvation = -1946.747113 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 192.121 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.69485 -36.97263 -34.30056 -33.92918 -29.06266 -27.70220 -23.85278 -23.57289 -22.35676 -21.08324 -18.87783 -18.32786 -17.05665 -16.36488 -15.71102 -15.08880 -14.69185 -14.42788 -14.07983 -13.84196 -13.39988 -13.03556 -12.76790 -12.33573 -12.15461 -12.05544 -11.67155 -11.57829 -11.32127 -11.15943 -10.91306 -10.69739 -10.28666 -9.71792 -8.28434 -6.28041 1.36519 1.37972 1.48338 2.37039 2.72685 3.02862 3.45830 3.77315 3.93813 4.16849 4.17962 4.27016 4.37035 4.53545 4.58238 4.69059 4.73440 4.91878 4.98699 5.03547 5.05999 5.11781 5.19316 5.35111 5.39624 5.44198 5.49208 5.60664 5.68809 5.75811 6.36710 6.73781 7.33088 8.86985 Molecular weight = 192.12amu Principal moments of inertia in cm(-1) A = 0.051479 B = 0.011501 C = 0.010559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.781191 B = 2434.007937 C = 2651.231908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.269 1.269 5 H -0.246 1.246 6 H -0.287 1.287 7 C -0.487 4.487 8 H 0.040 0.960 9 C -0.043 4.043 10 H 0.071 0.929 11 C -0.192 4.192 12 C -0.094 4.094 13 C -0.064 4.064 14 C -0.108 4.108 15 C -0.084 4.084 16 C -0.134 4.134 17 H 0.122 0.878 18 C -0.181 4.181 19 C -0.114 4.114 20 H 0.102 0.898 21 H 0.266 0.734 22 H 0.070 0.930 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -6.715 1.596 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.170 1.170 6 H -0.213 1.213 7 C -0.525 4.525 8 H 0.058 0.942 9 C -0.062 4.062 10 H 0.088 0.912 11 C -0.230 4.230 12 C -0.094 4.094 13 C -0.101 4.101 14 C -0.146 4.146 15 C -0.121 4.121 16 C -0.152 4.152 17 H 0.140 0.860 18 C -0.218 4.218 19 C -0.132 4.132 20 H 0.120 0.880 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.214 -6.620 1.602 14.866 hybrid contribution -0.555 0.971 -0.133 1.127 sum 12.659 -5.649 1.468 13.940 Atomic orbital electron populations 1.70051 1.08219 1.28119 1.52653 1.25924 0.95470 1.03262 0.94065 0.85641 0.79418 0.78295 0.79051 1.19446 1.17011 1.21302 1.20805 0.89870 0.93158 1.48619 0.94220 1.20405 0.92906 0.94893 0.97949 0.91157 1.23319 1.01846 1.05787 0.92053 1.20619 0.96061 0.92420 1.00285 1.20310 0.96544 0.93418 0.99863 1.20744 0.97796 0.96323 0.99713 1.20509 0.96715 0.96365 0.98530 1.22223 1.00010 0.90242 1.02685 0.85971 1.23103 1.02319 1.04823 0.91566 1.21290 0.96275 0.98670 0.96988 0.88025 0.92493 0.91151 0.88975 0.94600 0.94341 0.91390 0.92201 0.92206 0.89385 0.90492 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 2 C 0.01 0.57 5.47 84.65 0.46 1.04 16 3 Si 0.95 45.22 27.75 68.60 1.90 47.12 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.25 -10.86 6.03 99.48 0.60 -10.26 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.49 -28.42 9.23 25.60 0.24 -28.18 16 8 H 0.04 2.55 6.73 -2.91 -0.02 2.53 16 9 C -0.04 -2.07 4.52 -11.46 -0.05 -2.12 16 10 H 0.07 3.37 5.91 -2.39 -0.01 3.35 16 11 C -0.19 -8.05 9.57 30.71 0.29 -7.75 16 12 C -0.09 -3.76 2.28 -52.31 -0.12 -3.88 16 13 C -0.06 -2.52 4.17 29.86 0.12 -2.40 16 14 C -0.11 -3.20 5.71 29.46 0.17 -3.03 16 15 C -0.08 -2.08 5.77 29.67 0.17 -1.91 16 16 C -0.13 -3.45 6.19 -11.13 -0.07 -3.52 16 17 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 18 C -0.18 -5.26 9.85 30.59 0.30 -4.96 16 19 C -0.11 -3.70 5.55 -11.44 -0.06 -3.77 16 20 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 21 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 22 H 0.07 3.09 8.08 -2.39 -0.02 3.07 16 23 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.04 1.70 7.31 -2.39 -0.02 1.68 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.48 8.04 -2.38 -0.02 1.46 16 29 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 Total: -1.00 -64.75 247.91 4.64 -60.12 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.98 Total: 13.08 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 1.45 Total: -60.49 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.30 Total: -59.83 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.90 Total: 47.12 kcal Total: -64.75 4.64 -60.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260039667.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.879 kcal (2) G-P(sol) polarization free energy of solvation -64.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds